RetrogeneDB ID: retro_mmur_1198

Retrocopy location

• Organism: Mouse Lemur (Microcebus murinus)
• Coordinates: scaffold_30937:3073..4330(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: GPBP1
• Ensembl ID: ENSMICG00000014678
• Aliases: None
• Description: GC-rich promoter binding protein 1 [Source:HGNC Symbol;Acc:29520]

Sequence

>retro_mmur_1198
ATGGCACAGCATGACTTTTCTCCAGCCTGGCTTAATTTTCCTACTCCACCATCATCAACAAAGTCATCATTGAATTTTGA
GAAGCATTCTGAAAACTTTTCATGGACCGAAAATCGTTATGATGTGAATCGTCAACGACACAACTCTTCAGATGGCTTTG
ATTCTGGTGTTGGACATCCTAATGGGGGTAACTTTGGAAGGAAAGAAAAAAACGGATGGCATACACATGGAAGAAATGGT
ACTGAAAACATAAATCATCGAGGGGGATACCATGGTGGGAGTTCCCGTTCTCGTAGCAGTATTTTCCATTCTGGAAAAAT
CCTACATGAAAACAATGTACCTGACCATGAAACTGGGAGGAAAGAAGACAAGAGAGAACGCAAACTGTTTGAGGCTGAGG
ATTTTCCGTCTTTAAATCCTGAATATGAGAGAGAACCAAATCAGAATAAATCTTTAGCTGCAGGTGTATGGGAATATCCT
CCGAATCCTAAATCTAGAGCTCCAAGGATGCTGGTCATTAAGAAAGGTAATACAAAAGACTTACAGCTATCTGGATTCCC
AGTAGTGGGAAATCTTCAGTCACAGCCAGTTAAGAATGGAACTGGTCCAAGTGTTTATAAAGGTTTAGTCCCTAAACCTG
CTGCTGCACCTACAAAACCTACACAATGGAAAAGCCAAACTAAAGAAAATAAAGCTGGGACTTCTTTCCCTCATGAGTCT
ACATATGATGTTGGCAACTTTAATGCTTTTAAATCAACTGCCAAGAATTTTAGTCCATCACCAAATTCAGTGAAAGAGTG
TAATCGCTCAAATTCCTCTTCACCTGTTGACAAACTCAATCAGCAGCCTCGTCTAACCAAACTGACATGAATGTGCACAG
ATAAGAAGAGTGAATTTTTTAAAGCATTGAAAAGGGACAGAGTAGAAGAGGAACATGAAGATGAAAGCCATGCTGGCTCA
GAGAAGGATGACGACTCATTTAATTTACATAACAGCAATAGCTCTCACGAAGAAAGGGATATAAACCGAAACTTTGATGA
AAATGAAATTCCACAAGAGAATGGCAATGCCTCGGTGATTTCCCAACAGATCATTCAGTCTTCAACCTTCCCACAAACTG
ATGTTCTTTCAAGTTCACTTGAGGCAGAACACAGATTGTTGAAGGAGATGGGCTGGCAGGAAGACAGTGAAAATGATGAA
ACATGTGCTCCCTTAACGGAGGATGAAATGAGAGAATTCCAAGTTATTAGTGAACAG

Alignment

ORF - retro_mmur_1198 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 93.62 %
• Parental protein coverage: 88.96 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MAQHDFAPAWLNFPTPPSSTKVFLHLSFEKH-ENF-WTENR-DVNRRRHNSSDG-DSGVGRPNGGNFGRK
          MAQHDF.PAWLNFPTPPSSTK....L.FEKH.ENF.WTENR.DVNR.RHNSSDG.DSGVG.PNGGNFGRK
Retrocopy MAQHDFSPAWLNFPTPPSSTKS--SLNFEKHSENFSWTENRYDVNRQRHNSSDGFDSGVGHPNGGNFGRK

Parental  EKNGWRTHGRNGTENINHRGGYHGGSSRSRSSIFHSGKSQGLHENNVPDNETGRKEDKRERKQFEAEDFP
          EKNGW.THGRNGTENINHRGGYHGGSSRSRSSIFHSGK...LHENNVPD.ETGRKEDKRERK.FEAEDFP
Retrocopy EKNGWHTHGRNGTENINHRGGYHGGSSRSRSSIFHSGKI--LHENNVPDHETGRKEDKRERKLFEAEDFP

Parental  SLNPEYEREPNQNKSLAAGVWEYPPNPKSRAPRMLVIKKGNTKDLQLSGFPVVGNLQSQPVKNGTGPSVY
          SLNPEYEREPNQNKSLAAGVWEYPPNPKSRAPRMLVIKKGNTKDLQLSGFPVVGNLQSQPVKNGTGPSVY
Retrocopy SLNPEYEREPNQNKSLAAGVWEYPPNPKSRAPRMLVIKKGNTKDLQLSGFPVVGNLQSQPVKNGTGPSVY

Parental  KGLVPKPAAPPTKPTQWKSQTKENKAGTSFPHESTYGVGNFNAFKSTAKNFSPSPNSVKECNRSNSSSPV
          KGLVPKPAA.PTKPTQWKSQTKENKAGTSFPHESTY.VGNFNAFKSTAKNFSPSPNSVKECNRSNSSSPV
Retrocopy KGLVPKPAAAPTKPTQWKSQTKENKAGTSFPHESTYDVGNFNAFKSTAKNFSPSPNSVKECNRSNSSSPV

Parental  DKLNQQPRLTKLTRMRTDKKSEFLKALKRDRVEEEHEDESHAGSEKDDDSFNLHNSNSSHQERDINRNFD
          DKLNQQPRLTKLT.M.TDKKSEF.KALKRDRVEEEHEDESHAGSEKDDDSFNLHNSNSSH.ERDINRNFD
Retrocopy DKLNQQPRLTKLT*MCTDKKSEFFKALKRDRVEEEHEDESHAGSEKDDDSFNLHNSNSSHEERDINRNFD

Parental  ENEIPQENGNASVISQQIIRSSTFPQTDVLSSSLEAEHRLVFEMGWQEDSENDETCAPLTEDEMREFQVI
          ENEIPQENGNASVISQQII.SSTFPQTDVLSSSLEAEHRL..EMGWQEDSENDETCAPLTEDEMREFQVI
Retrocopy ENEIPQENGNASVISQQIIQSSTFPQTDVLSSSLEAEHRLLKEMGWQEDSENDETCAPLTEDEMREFQVI

Parental  SEQ
          SEQ
Retrocopy SEQ

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Microcebus murinus was not studied using RNA-Seq expression data.

ChIP-Seq

Microcebus murinus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mmur_1198 retrocopy.

TSS

Microcebus murinus was not studied using FANTOM5 data.

Lab

retro_mmur_1198 was not experimentally validated.

Homology

Retrocopy orthology:

Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 7 parental genes, and 7 retrocopies.

Species	Parental gene accession	Retrocopies number
Callithrix jacchus	ENSCJAG00000015104	1 retrocopy	retro_cjac_3961,
Microcebus murinus	ENSMICG00000008449	1 retrocopy	retro_mmur_164,
Microcebus murinus	ENSMICG00000014678	1 retrocopy	retro_mmur_1198 ,
Myotis lucifugus	ENSMLUG00000007462	1 retrocopy	retro_mluc_155,
Monodelphis domestica	ENSMODG00000019540	1 retrocopy	retro_mdom_283,
Otolemur garnettii	ENSOGAG00000013991	1 retrocopy	retro_ogar_1077,
Ictidomys tridecemlineatus	ENSSTOG00000003057	1 retrocopy	retro_itri_1678,