Parental gene:

ENSSSCG00000028454

Aliases:None
Description:None
Organism:Pig (Sus scrofa)
Coordinates:3:34418286..34447198(-)


>ENSSSCG00000028454
ATGGAGGAGCGGAAAGAGGAGGGCGAGGCCGAGATCCAGGAGCACGGGCCCGAGCACTGGTTTTCCAAGTGGGAGCGGCA
GTGCCTGGCCGAGGCGGAGCAGGACGAGCAGCTGCCCCCCGAGCTGCAGGAGGAGGCGGCGGCCGCCGCGCAGCCCGAGC
ACAAGCAGCAGAAACTGTGGCACCTCTTCCAGAACTCGGCCACCGCCGTGGCCCAGCTCTACAAAGACCGAGTGTGTCAG
CAGCCAGGACTTTCTCTCTGGGTCCCCTTCCAAAACGCAGCCACCGCTGTCACCAACCTCTACAAAGAAAGCGTGGATAC
CCATCAGCGAAGTTTTGATATTGGAATTCAGATTGGCTATCAGCGACGCAATAAGGATGTGTTGGCTTGGGTTAAAAAGC
GCAGAAGAACTATTCGTAGAGAAGATTTGATCAGCTTCCTGTGTGGAAAAGTTCCTCCACCACGAAACTCTAGAGCTCCC
CCAAGACTGACTGTAGTGTCCCCTAACCGAGCTACTTCAACGGAAACTAGCTCATCTGTAGAGACTGATTTGCAACCCTT
CCGGGAAGCCATAGCTCTGCATGGTCTTAGTGGTGCAATGGCTAGTATAAGCGTGCGTTCGAGTACCCCAGGCTCTCCTA
CACATGTAAGCAGTGGATCGAATGCTAGTCGAAGGAGAAATGGACTCCATGATGTCGATTTGAACACTTTCATATCAGAA
GAAATGGCACTCCACTTGGACAATGGTGGAACTAGAAAGCGTACCTCAGCCCAGTGTGGCGATGTCATTACAGACTCACC
AACCCATAAACGCAACAGAATGATCTAA

Library Parental gene expression (RPM)
SRP014902_placenta 20 .04 RPM
SRP014902_testis 26 .87 RPM
SRP018856_adipose 8 .29 RPM
SRP018288_kidney 26 .99 RPM
SRP018288_lung 16 .09 RPM
SRP018288_liver 17 .75 RPM
SRP018288_heart 20 .69 RPM
SRP035408_liver 9 .66 RPM
SRP035408_brain 9 .81 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000010719 ortholog_one2many 2 retrogenes
retro_amel_1715, retro_amel_88,
Canis familiaris ENSCAFG00000018981 ortholog_one2many 1 retrogene
retro_cfam_147,
Cavia porcellus ENSCPOG00000010925 ortholog_one2many 1 retrogene
retro_cpor_101,
Dasypus novemcinctus ENSDNOG00000015893 ortholog_many2many 3 retrogenes
retro_dnov_1575, retro_dnov_2266, retro_dnov_827,
Equus caballus ENSECAG00000009430 ortholog_one2many 1 retrogene
retro_ecab_1091,
Homo sapiens ENSG00000182831 ortholog_one2many 1 retrogene
retro_hsap_4765,
Gorilla gorilla ENSGGOG00000010744 ortholog_one2many 1 retrogene
retro_ggor_2968,
Monodelphis domestica ENSMODG00000005378 ortholog_one2many 2 retrogenes
retro_mdom_1716, retro_mdom_299,
Mustela putorius furo ENSMPUG00000014707 ortholog_one2many 1 retrogene
retro_mputfur_44,
Mus musculus ENSMUSG00000022507 ortholog_one2many 1 retrogene
retro_mmus_3460,
Nomascus leucogenys ENSNLEG00000010106 ortholog_one2many 1 retrogene
retro_nleu_2348,
Otolemur garnettii ENSOGAG00000003909 ortholog_one2many 1 retrogene
retro_ogar_74,
Pongo abelii ENSPPYG00000007088 ortholog_one2many 1 retrogene
retro_pabe_163,
Pan troglodytes ENSPTRG00000007751 ortholog_one2many 1 retrogene
retro_ptro_3172,
Rattus norvegicus ENSRNOG00000002545 ortholog_one2many 2 retrogenes
retro_rnor_156, retro_rnor_1928,
Ictidomys tridecemlineatus ENSSTOG00000009324 ortholog_one2many 1 retrogene
retro_itri_137,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_1177 67.50 100.00
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Download FASTA sequences of all ENSSSCG00000028454 retrocopies