Parental gene:

SUMO3, ENSSSCG00000024026

Aliases:None
Description:small ubiquitin-like modifier 3 [Source:HGNC Symbol;Acc:11124]
Organism:Pig (Sus scrofa)
Coordinates:13:217406418..217415364(-)


>ENSSSCG00000024026
ATGTCCGAGGAGAAGCCCAAGGAGGGGGTGAAGACGGAGAATGACCACATCAACCTGAAGGTGGCCGGGCAGGACGGCTC
CGTGGTCCAGTTCAAGATCAAGAGACACACGCCGCTCAGCAAGCTGATGAAGGCCTACTGCGAGCGCCAGGGCTTGTCGA
TGAGACAGATTCGGTTCAGGTTTGACGGACAGCCGATCAATGAAGCAGACACCCCAGCACAGCTGGAGATGGAGGACGAG
GACACCATCGACGTGTTCCAGCAGCAGACGGGGGGCTCGAGGCGAGCCGGCCGCCTCTCGGGGTGCCGCCTCTAG

Library Parental gene expression (RPM)
SRP014902_placenta 122 .64 RPM
SRP014902_testis 86 .00 RPM
SRP018856_adipose 54 .81 RPM
SRP018288_kidney 72 .20 RPM
SRP018288_lung 47 .45 RPM
SRP018288_liver 66 .20 RPM
SRP018288_heart 19 .44 RPM
SRP035408_liver 68 .99 RPM
SRP035408_brain 121 .80 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000002071 ortholog_one2one 3 retrogenes
retro_amel_1388, retro_amel_1586, retro_amel_1863,
Bos taurus ENSBTAG00000017321 possible_ortholog 3 retrogenes
retro_btau_1730, retro_btau_580, retro_btau_701,
Bos taurus ENSBTAG00000030169 possible_ortholog 8 retrogenes
retro_btau_1047, retro_btau_1484, retro_btau_1804, retro_btau_260, retro_btau_344, retro_btau_489, retro_btau_582, retro_btau_895,
Callithrix jacchus ENSCJAG00000010529 ortholog_one2one 20 retrogenes
retro_cjac_1110, retro_cjac_1128, retro_cjac_1525, retro_cjac_1752, retro_cjac_1938, retro_cjac_1957, retro_cjac_1993, retro_cjac_2460, retro_cjac_2481, retro_cjac_2616, retro_cjac_2651, retro_cjac_2886, retro_cjac_2899, retro_cjac_2985, retro_cjac_3088, retro_cjac_3137, retro_cjac_4123, retro_cjac_711, retro_cjac_771, retro_cjac_774,
Felis catus ENSFCAG00000026550 ortholog_one2one 4 retrogenes
retro_fcat_1210, retro_fcat_1947, retro_fcat_823, retro_fcat_836,
Microcebus murinus ENSMICG00000011011 ortholog_one2one 2 retrogenes
retro_mmur_179, retro_mmur_41,
Myotis lucifugus ENSMLUG00000025342 possible_ortholog 4 retrogenes
retro_mluc_1502, retro_mluc_272, retro_mluc_340, retro_mluc_625,
Myotis lucifugus ENSMLUG00000028601 ortholog_one2one 2 retrogenes
retro_mluc_1321, retro_mluc_2494,
Macaca mulatta ENSMMUG00000006760 possible_ortholog 3 retrogenes
retro_mmul_2131, retro_mmul_2215, retro_mmul_47,
Mustela putorius furo ENSMPUG00000010234 ortholog_one2one 1 retrogene
retro_mputfur_1504,
Mustela putorius furo ENSMPUG00000013954 possible_ortholog 9 retrogenes
retro_mputfur_1086, retro_mputfur_1403, retro_mputfur_1535, retro_mputfur_273, retro_mputfur_275, retro_mputfur_385, retro_mputfur_666, retro_mputfur_948, retro_mputfur_995,
Oryctolagus cuniculus ENSOCUG00000021739 ortholog_one2one 4 retrogenes
retro_ocun_1024, retro_ocun_1631, retro_ocun_1690, retro_ocun_321,
Rattus norvegicus ENSRNOG00000038489 possible_ortholog 1 retrogene
retro_rnor_2158,
Sus scrofa ENSSSCG00000017212 within_species_paralog 15 retrogenes
retro_sscr_1112, retro_sscr_1132, retro_sscr_1147, retro_sscr_1148, retro_sscr_123, retro_sscr_249, retro_sscr_277, retro_sscr_409, retro_sscr_591, retro_sscr_684, retro_sscr_754, retro_sscr_765, retro_sscr_814, retro_sscr_847, retro_sscr_969,
Ictidomys tridecemlineatus ENSSTOG00000010587 ortholog_one2one 2 retrogenes
retro_itri_116, retro_itri_1259,
Ictidomys tridecemlineatus ENSSTOG00000024685 possible_ortholog 10 retrogenes
retro_itri_1017, retro_itri_1123, retro_itri_1355, retro_itri_202, retro_itri_264, retro_itri_272, retro_itri_79, retro_itri_921, retro_itri_981, retro_itri_983,
Takifugu rubripes ENSTRUG00000014892 possible_ortholog 1 retrogene
retro_trub_25,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_320 73.00 95.19
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2. retro_sscr_1089 68.24 79.81
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Download FASTA sequences of all ENSSSCG00000024026 retrocopies