Parental gene: | CHN2, ENSSSCG00000016687 |
| Aliases: | None |
| Description: | chimerin 2 [Source:HGNC Symbol;Acc:1944] |
| Organism: | Pig (Sus scrofa) |
| Coordinates: | 18:47596366..47715301(-) |
>ENSSSCG00000016687
GTGGAAAACAGACCAAAATATTATGGAAGAGAGTTTCATGGAATCATCTCCCGAGAGCAGGCAGATGAACTTCTTGGAGG
CGTGGAGGGTGCCTACATTCTTAGAGAAAGCCAGCGCCAGCCAGGATGCTACACGTTAGCGCTAAGGTTTGGAAACCAGA
CCTTAAACTACAGGCTCTTCTATGATGGAAAACACTTTGTGGGCGAGAAGAGGTTTGAATCGATTCACGATCTGGTCACA
GATGGCTTGATAACACTGTACATAGAAACAAAAGCTTCTGAATACATTTCCAAAATGACAACAAACCCCATCTATGAACA
CATTGGCTATGCCACTTTGCTCAGAGAAAAAGTCTCCCGGAGACTAAGCAGGTCTAAAAATGAATCAAGAAAAGCCAACG
TCACCAACGAAGAGCACGCAGCAGTTGAAAAGATCTCCTCCCTGGTCCGAAGGGCCGCCCTCACACACCACGACAACCAC
TTCAACTATGAGAAGACACACAACTTTAAGGTCCACACGTTCCGAGGCCCGCACTGGTGTGAATACTGTGCCAACTTCAT
GTGGGGCCTCATTGCCCAAGGGGTCCGGTGCTCAGACTGTGGGTTGAACGTACACAAACAGTGTTCCAAGCACGTTCCCA
ACGACTGCCAGCCTGATCTCAAGAGGATCAAGAAGGTGTACTGCTGTGACCTCACGACACTGGTGAAGGCTCACAACACG
CAGAGACCCATGGTGGTAGACATATGCATTCGGGAAATTGAAGCAAGAGGATTAAAATCAGAAGGCCTTTATAGAGTCTC
TGGATTCACTGAACACATCGAAGATGTCAAAATGGCATTTGACAGAGACGGTGAAAAGGCAGATATATCTGCCAGCATCT
ATCCAGACATAAACATCATCACTGGAGCCCTTAAACTGTACTTCAGAGACTTACCCATTCCTGTCATCACCTATGATACC
TATTCTAAATTTATAGAAGCAGCAAAAATCTCCAATGTGGATGAGAGGCTGGAAGCAGTCCATGAGGTGCTGATGCTGCT
GCCACCTGCCCACTATGAGACCCTCCGCTACCTAATGATCCACCTCAAGAAGGTGACTCTGAATGAAAAGGACAATTTCA
TGAATGCTGAAAACCTGGGGATCGTGTTCGGGCCCACCTTGATGAGGCCCCCCGAGGACAGCACCCTCACCACCCTCCAC
GACATGCGGTACCAAAAGCTAATTGTGCAGATTTTAATAGAAAACGAAGATGTTTTGTTCTAA
GTGGAAAACAGACCAAAATATTATGGAAGAGAGTTTCATGGAATCATCTCCCGAGAGCAGGCAGATGAACTTCTTGGAGG
CGTGGAGGGTGCCTACATTCTTAGAGAAAGCCAGCGCCAGCCAGGATGCTACACGTTAGCGCTAAGGTTTGGAAACCAGA
CCTTAAACTACAGGCTCTTCTATGATGGAAAACACTTTGTGGGCGAGAAGAGGTTTGAATCGATTCACGATCTGGTCACA
GATGGCTTGATAACACTGTACATAGAAACAAAAGCTTCTGAATACATTTCCAAAATGACAACAAACCCCATCTATGAACA
CATTGGCTATGCCACTTTGCTCAGAGAAAAAGTCTCCCGGAGACTAAGCAGGTCTAAAAATGAATCAAGAAAAGCCAACG
TCACCAACGAAGAGCACGCAGCAGTTGAAAAGATCTCCTCCCTGGTCCGAAGGGCCGCCCTCACACACCACGACAACCAC
TTCAACTATGAGAAGACACACAACTTTAAGGTCCACACGTTCCGAGGCCCGCACTGGTGTGAATACTGTGCCAACTTCAT
GTGGGGCCTCATTGCCCAAGGGGTCCGGTGCTCAGACTGTGGGTTGAACGTACACAAACAGTGTTCCAAGCACGTTCCCA
ACGACTGCCAGCCTGATCTCAAGAGGATCAAGAAGGTGTACTGCTGTGACCTCACGACACTGGTGAAGGCTCACAACACG
CAGAGACCCATGGTGGTAGACATATGCATTCGGGAAATTGAAGCAAGAGGATTAAAATCAGAAGGCCTTTATAGAGTCTC
TGGATTCACTGAACACATCGAAGATGTCAAAATGGCATTTGACAGAGACGGTGAAAAGGCAGATATATCTGCCAGCATCT
ATCCAGACATAAACATCATCACTGGAGCCCTTAAACTGTACTTCAGAGACTTACCCATTCCTGTCATCACCTATGATACC
TATTCTAAATTTATAGAAGCAGCAAAAATCTCCAATGTGGATGAGAGGCTGGAAGCAGTCCATGAGGTGCTGATGCTGCT
GCCACCTGCCCACTATGAGACCCTCCGCTACCTAATGATCCACCTCAAGAAGGTGACTCTGAATGAAAAGGACAATTTCA
TGAATGCTGAAAACCTGGGGATCGTGTTCGGGCCCACCTTGATGAGGCCCCCCGAGGACAGCACCCTCACCACCCTCCAC
GACATGCGGTACCAAAAGCTAATTGTGCAGATTTTAATAGAAAACGAAGATGTTTTGTTCTAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP014902_placenta | 0 .40 RPM |
| SRP014902_testis | 3 .39 RPM |
| SRP018856_adipose | 1 .26 RPM |
| SRP018288_kidney | 1 .28 RPM |
| SRP018288_lung | 8 .86 RPM |
| SRP018288_liver | 21 .91 RPM |
| SRP018288_heart | 6 .68 RPM |
| SRP035408_liver | 22 .52 RPM |
| SRP035408_brain | 8 .13 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Canis familiaris | ENSCAFG00000003023 | ortholog_one2one | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000008329 | ortholog_one2one | 1 retrogene | |
| Oryctolagus cuniculus | ENSOCUG00000009401 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_sscr_939 | 56.90 | 68.10 | Please wait, loading  | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSSSCG00000016687 retrocopies