Parental gene:

ENSSSCG00000015034

Aliases:SDHD, CII-4, CybS, QPs3
Description:Sus scrofa succinate dehydrogenase complex, subunit D, integral membrane protein (SDHD), nuclear gene encoding mitochondrial protein, mRNA. [Source:RefSeq mRNA;Acc:NM_001097516]
Organism:Pig (Sus scrofa)
Coordinates:9:44632243..44645594(+)


>ENSSSCG00000015034
ATGGCGACTCTCTGGAGGCTCAGTGTTCTTTGCGGTCCCCGAGGAGGAGGAGCTCTGGTCCTCCGGACCTCAGTGGTCAG
ACCTGCTCATGTCTCAGCATTTCTCCAGGACCGACATACCCCGGGATGGTGTGGAGTACAGCACATTCACCTGTCACCCA
GCCACCAGGCTAGTTCCAAGGCTGCATCTCTCCACTGGACTGGTGAGAGGGTTGTCAGTGTTTTGCTCCTGGGCCTACTT
CCAGCCGCTTATTTGAATCCTTGCTCTGCGATGGACTACTCCCTGGCCGCAGCCCTCACTCTCCATGGTCACTGGGGCAT
TGGACAAGTCGTTACTGACTACGTGCGAGGGGATGCACTGCAGAAAGCTGCCAAGGCAGGCCTTTTGGCGCTCTCGGCTT
TCACCTTTGCTGGGCTTTGTTATTTCAACTATCATGATGTGGGGATCTGCAAAGCTGTTGCCATGTTGTGGAAGCTCTGA

Library Parental gene expression (RPM)
SRP014902_placenta 47 .92 RPM
SRP014902_testis 37 .62 RPM
SRP018856_adipose 112 .71 RPM
SRP018288_kidney 260 .25 RPM
SRP018288_lung 34 .42 RPM
SRP018288_liver 149 .84 RPM
SRP018288_heart 234 .72 RPM
SRP035408_liver 114 .78 RPM
SRP035408_brain 58 .88 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000004066 ortholog_one2one 3 retrogenes
retro_amel_1556, retro_amel_1588, retro_amel_998,
Erinaceus europaeus ENSEEUG00000013091 ortholog_one2one 1 retrogene
retro_eeur_336,
Echinops telfairi ENSETEG00000008424 ortholog_one2one 1 retrogene
retro_etel_252,
Felis catus ENSFCAG00000022580 ortholog_one2one 3 retrogenes
retro_fcat_1371, retro_fcat_175, retro_fcat_492,
Homo sapiens ENSG00000204370 possible_ortholog 8 retrogenes
retro_hsap_124, retro_hsap_1912, retro_hsap_2132, retro_hsap_2182, retro_hsap_2729, retro_hsap_2784, retro_hsap_355, retro_hsap_3791,
Gorilla gorilla ENSGGOG00000026496 ortholog_one2one 1 retrogene
retro_ggor_50,
Loxodonta africana ENSLAFG00000002763 ortholog_one2one 1 retrogene
retro_lafr_432,
Myotis lucifugus ENSMLUG00000012228 ortholog_one2one 3 retrogenes
retro_mluc_2418, retro_mluc_457, retro_mluc_756,
Macaca mulatta ENSMMUG00000015247 possible_ortholog 1 retrogene
retro_mmul_224,
Rattus norvegicus ENSRNOG00000022980 ortholog_one2one 3 retrogenes
retro_rnor_1529, retro_rnor_1686, retro_rnor_744,
Tursiops truncatus ENSTTRG00000010520 ortholog_one2one 5 retrogenes
retro_ttru_1554, retro_ttru_238, retro_ttru_616, retro_ttru_633, retro_ttru_885,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_626 77.19 70.44
Please wait, loading
Please wait, loading
Please wait, loading
2. retro_sscr_627 77.88 70.44
Please wait, loading
Please wait, loading
Please wait, loading
3. retro_sscr_1060 66.90 88.68
Please wait, loading
Please wait, loading
Please wait, loading
Download FASTA sequences of all ENSSSCG00000015034 retrocopies