Parental gene: | TRPT1, ENSSSCG00000013040 |
| Aliases: | None |
| Description: | tRNA phosphotransferase 1 [Source:HGNC Symbol;Acc:20316] |
| Organism: | Pig (Sus scrofa) |
| Coordinates: | 2:6950711..6953739(+) |
>ENSSSCG00000013040
ATGAACTCTGGAGGAAGGAGGCAGGAAGCAGCAGGGCCCAGGGGTAGAAGGGCTCACAGACCCCGGGAACAGGACCGAGA
TGTACAACTGTCCAAGGCTCTGTCCTATGCCCTGCGCCACGGGGCCCTGAAGCTGGGGCTTCCCATGGGGGCCGATGGTT
TTGTGCCTCTGGGCGCCCTCCTGCAGCTGCCTCAGTTCCGCAGCTTCTCAGCTGAGGATGTGCAGCGCGTGGTGGACACC
AACGAGAAGCAGCGGTTCACCCTGCAGCCGGGGGACCCCAGCACGGGCCCTCTCATCCGGGCCAATCAGGGTCACTCCTT
GCAGGTACCTGCGTTGGAGCTGATCCCCCTGGAGACCCCGCAGGCCCTGCCTCTGATGCTCGTCCACGGCACATTCTGGC
GGCACTGGCCATCCATCCTGCTCAAGGGCCTGTCCCGCCAGGGAAGGACGCACATCCACCTGGCCCCGGGACTGCCTGGG
GACCCTGGCGTCATCAGTGGCATGAGGCCCAACTGTGAAGTGGCTGTGTTCATCAACGGGCCCCAGGCCCTGGCAGATGG
AATCCCCTTCTTCCGCTCTGCCAATGGGGTGATCCTGACTCCAGGGAACGCTGATGGCGTCTTGCTTCCCAAATACTTCA
AGGAGGCCCTGCAGCTACGCCCTACCCGAAAGCCCCTCTCCTTGGCTGGTAATGAAGAGACAGAGTGTCAGCATGGCCCC
AAGCACAGCTCCAGAGGAAGAAGAACAACCCCACAATAA
ATGAACTCTGGAGGAAGGAGGCAGGAAGCAGCAGGGCCCAGGGGTAGAAGGGCTCACAGACCCCGGGAACAGGACCGAGA
TGTACAACTGTCCAAGGCTCTGTCCTATGCCCTGCGCCACGGGGCCCTGAAGCTGGGGCTTCCCATGGGGGCCGATGGTT
TTGTGCCTCTGGGCGCCCTCCTGCAGCTGCCTCAGTTCCGCAGCTTCTCAGCTGAGGATGTGCAGCGCGTGGTGGACACC
AACGAGAAGCAGCGGTTCACCCTGCAGCCGGGGGACCCCAGCACGGGCCCTCTCATCCGGGCCAATCAGGGTCACTCCTT
GCAGGTACCTGCGTTGGAGCTGATCCCCCTGGAGACCCCGCAGGCCCTGCCTCTGATGCTCGTCCACGGCACATTCTGGC
GGCACTGGCCATCCATCCTGCTCAAGGGCCTGTCCCGCCAGGGAAGGACGCACATCCACCTGGCCCCGGGACTGCCTGGG
GACCCTGGCGTCATCAGTGGCATGAGGCCCAACTGTGAAGTGGCTGTGTTCATCAACGGGCCCCAGGCCCTGGCAGATGG
AATCCCCTTCTTCCGCTCTGCCAATGGGGTGATCCTGACTCCAGGGAACGCTGATGGCGTCTTGCTTCCCAAATACTTCA
AGGAGGCCCTGCAGCTACGCCCTACCCGAAAGCCCCTCTCCTTGGCTGGTAATGAAGAGACAGAGTGTCAGCATGGCCCC
AAGCACAGCTCCAGAGGAAGAAGAACAACCCCACAATAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP014902_placenta | 3 .98 RPM |
| SRP014902_testis | 4 .81 RPM |
| SRP018856_adipose | 7 .81 RPM |
| SRP018288_kidney | 9 .06 RPM |
| SRP018288_lung | 2 .24 RPM |
| SRP018288_liver | 5 .12 RPM |
| SRP018288_heart | 4 .43 RPM |
| SRP035408_liver | 8 .19 RPM |
| SRP035408_brain | 4 .80 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Equus caballus | ENSECAG00000009917 | ortholog_one2one | 1 retrogene | |
| Tursiops truncatus | ENSTTRG00000010252 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_sscr_1146 | 69.70 | 65.08 | Please wait, loading  | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSSSCG00000013040 retrocopies