Parental gene: | TRPT1, ENSECAG00000009917 |
| Aliases: | None |
| Description: | tRNA phosphotransferase 1 [Source:HGNC Symbol;Acc:20316] |
| Organism: | Horse (Equus caballus) |
| Coordinates: | 12:24530885..24532904(-) |
>ENSECAG00000009917
ATGGACACCTCTGGAGGAAGGAGGCAGGAAGCAGGAGGGCCCAGGGGTAGAAAGGCTCGCAGACCCCGGGAACAGGACCG
AGACATGCAGCTGTCCAAGGCTCTGTCCTACGCCCTGCGCCACGGGGCCCTGAAGCTGGGGCTTCCCATGGGGGCCGATG
GATTCGTGCCCCTGGGCGCCCTCCTGCAGCTGCCGCAGTTCCGCAGCTTCTCGGCTGAAGACGTGCAGCGTGTGGTGGCC
ACCAACGCGAAGCAGCGGTTTGCCCTGCAGCCGGGGGACCCCAGCACCGGCCCTCTCATCCGGGCCAACCAGGGTCACTC
CCTGCAGGTACCTGAGTTGGAGCTGATGCCCCTGGAGACCCCGCAGGCCCTGCCCCCCATGCTCATCCATGGCACGTTCT
GGCAACACTGGCCATCCATCCTTCTCAAGGGCCTGTCCTGCCGGGGAAGGACGCACATCCACCTGGCCACCGGACTGCCT
GGGGACCCTGGTGTCATCAGTGGCATACGGCCAAACTGTGAAGTGGCCGTGTTCATCAACGGGCCCCTGGCCCTGGCAGA
TGGAATCCCCTTCTTCCGCTCTGCCAACGGGGTGATCCTGACTCCAGGGGACGCTGATGGCTTCTTGTTTCCCAAGTACT
TCAAGGAGGCCCTGCAGCTGCGCCCGACCCGAAAGCCCCTCTCCTTGGCTGGTGATGAAGAGACAGAGTGTCAGAGTGGC
CCCAAGCACAGCTCCAGAGGAAGAAGAATGACCCAACAATAA
ATGGACACCTCTGGAGGAAGGAGGCAGGAAGCAGGAGGGCCCAGGGGTAGAAAGGCTCGCAGACCCCGGGAACAGGACCG
AGACATGCAGCTGTCCAAGGCTCTGTCCTACGCCCTGCGCCACGGGGCCCTGAAGCTGGGGCTTCCCATGGGGGCCGATG
GATTCGTGCCCCTGGGCGCCCTCCTGCAGCTGCCGCAGTTCCGCAGCTTCTCGGCTGAAGACGTGCAGCGTGTGGTGGCC
ACCAACGCGAAGCAGCGGTTTGCCCTGCAGCCGGGGGACCCCAGCACCGGCCCTCTCATCCGGGCCAACCAGGGTCACTC
CCTGCAGGTACCTGAGTTGGAGCTGATGCCCCTGGAGACCCCGCAGGCCCTGCCCCCCATGCTCATCCATGGCACGTTCT
GGCAACACTGGCCATCCATCCTTCTCAAGGGCCTGTCCTGCCGGGGAAGGACGCACATCCACCTGGCCACCGGACTGCCT
GGGGACCCTGGTGTCATCAGTGGCATACGGCCAAACTGTGAAGTGGCCGTGTTCATCAACGGGCCCCTGGCCCTGGCAGA
TGGAATCCCCTTCTTCCGCTCTGCCAACGGGGTGATCCTGACTCCAGGGGACGCTGATGGCTTCTTGTTTCCCAAGTACT
TCAAGGAGGCCCTGCAGCTGCGCCCGACCCGAAAGCCCCTCTCCTTGGCTGGTGATGAAGAGACAGAGTGTCAGAGTGGC
CCCAAGCACAGCTCCAGAGGAAGAAGAATGACCCAACAATAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP021940_synovial_membrane | 9 .03 RPM |
| SRP021940_embryo | 11 .89 RPM |
| SRP021940_cerebellum | 14 .39 RPM |
| SRP021940_testis | 19 .31 RPM |
| SRP021940_placental_villous | 6 .16 RPM |
| SRP021940_articular_cartilage | 9 .68 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Sus scrofa | ENSSSCG00000013040 | ortholog_one2one | 1 retrogene | |
| Tursiops truncatus | ENSTTRG00000010252 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_ecab_1055 | 74.31 | 98.81 | Please wait, loading  | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSECAG00000009917 retrocopies