Parental gene:

RBMS2, ENSSSCG00000000402

Aliases:None
Description:RNA binding motif, single stranded interacting protein 2 [Source:HGNC Symbol;Acc:9909]
Organism:Pig (Sus scrofa)
Coordinates:5:23416673..23516564(+)


>ENSSSCG00000000402
ATGGCACCACCTAGTCCAAGCAACAGCACCCCTAACAGCAGCAATGGGAGCAATGTAAATGACCAGCTGAGTAAAACCAA
CCTCTACATCCGGGGATTGCAGCCAGGCACTACTGACCAGGACCTAGTCAAGTTGTGTCAGTCATATGGCAAGATTGTCT
CCACTAAGGCCATATTGGACAAGACCACAAACAAATGCAAAGGCTATGGCTTTGTGGACTTTGACAGTCCTTCAGCAGCA
CAGAAAGCTGTAACAGCACTGAAAGCCAGTGGTGTGCAAGCACAGATGGCAAAGCAACAAGAGCAGGACCCCACAAATCT
ATACATATCAAACCTCCCACTGTCAATGGATGAGCAAGAACTGGAGGGAATGCTGAAGCCTTTTGGCCAGGTTATCTCCA
CTCGAATCCTTCGAGACACCAGTGGGACCAGCAGAGGGGTTGGCTTTGCAAGGATGGAGTCCACAGAGAAGTGTGAAGCC
ATCATCACCCACTTTAATGGAAAATATATTAAGACACCCCCTGGAGTACCAGCCCCATCTGATCCCTTGCTTTGCAAATT
TGCTGATGGGGGTCCAAAGAAACGACAGAACCAAGGAAAATTTGTGCAAAATGGACGGGCCTGGCCAAGGAATGGAGACA
TGGGTGGTTTGGCCCTGACCTATGATCCTACCACAGCTCTTCAGAATGGGTTTTACCCAGCTCCTTATAACATCACCCCC
AACAGGATGCTTTCTCAATCTGCACTCTCACCGTACCTTCCGTCTCCTGTGTCTTCCTATCAGGTAGGTTCATGCCTCAG
AAAAGAGTGTGTTTCATATGCCTTGTCATGTGCATATACACAT

Library Parental gene expression (RPM)
SRP014902_placenta 18 .45 RPM
SRP014902_testis 16 .12 RPM
SRP018856_adipose 35 .89 RPM
SRP018288_kidney 5 .81 RPM
SRP018288_lung 53 .46 RPM
SRP018288_liver 6 .56 RPM
SRP018288_heart 16 .69 RPM
SRP035408_liver 5 .55 RPM
SRP035408_brain 0 .86 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000004054 ortholog_one2one 1 retrogene
retro_amel_454,
Callithrix jacchus ENSCJAG00000010803 ortholog_one2one 1 retrogene
retro_cjac_1022,
Homo sapiens ENSG00000076067 ortholog_one2one 1 retrogene
retro_hsap_1143,
Myotis lucifugus ENSMLUG00000000530 ortholog_one2one 1 retrogene
retro_mluc_1093,
Mus musculus ENSMUSG00000040043 ortholog_one2one 1 retrogene
retro_mmus_1530,
Pan troglodytes ENSPTRG00000005104 ortholog_one2one 1 retrogene
retro_ptro_778,
Pteropus vampyrus ENSPVAG00000007616 ortholog_one2one 2 retrogenes
retro_pvam_1429, retro_pvam_695,
Rattus norvegicus ENSRNOG00000003076 ortholog_one2one 1 retrogene
retro_rnor_1374,
Sus scrofa ENSSSCG00000003660 other_paralog 3 retrogenes
retro_sscr_1210, retro_sscr_974, retro_sscr_975,
Sus scrofa ENSSSCG00000006063 other_paralog 2 retrogenes
retro_sscr_1153, retro_sscr_1205,
Tursiops truncatus ENSTTRG00000002117 ortholog_one2one 1 retrogene
retro_ttru_715,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_546 86.84 53.74
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Download FASTA sequences of all ENSSSCG00000000402 retrocopies