Parental gene:

Prdx1, ENSRNOG00000017194

Aliases:Prdx1, Hbp23
Description:Peroxiredoxin-1 [Source:UniProtKB/Swiss-Prot;Acc:Q63716]
Organism:Rat (Rattus norvegicus)
Coordinates:5:139332536..139348214(+)


>ENSRNOG00000017194
ATGTCTTCAGGAAATGCAAAAATTGGGCATCCTGCTCCCAGCTTCAAAGCCACGGCTGTTATGCCCGATGGACAATTCAA
AGATATCAGCCTAAGTGATTACAAAGGAAAATATGTTGTATTCTTTTTTTACCCTCTTGACTTTACTTTTGTGTGTCCCA
CGGAGATCATTGCTTTCAGTGATAGAGCAGAAGAATTTAAGAAACTCAACTGCCAAGTGATTGGAGCTTCTGTGGATTCT
CACTTCTGTCATCTGGCATGGATTAACACACCCAAGAAACAAGGAGGATTGGGACCCATGAACATTCCCTTGGTATCAGA
TCCCAAGCGCACCATTGCTCAGGATTATGGAGTCTTAAAAGCTGATGAAGGTATCTCTTTCAGGGGCCTCTTTATTATTG
ATGATAAAGGTATCCTTCGCCAGATAACAATAAATGATCTTCCTGTTGGCCGCTCTGTGGATGAGATTCTGAGACTAGTC
CAGGCCTTCCAGTTCACTGACAAACATGGTGAAGTGTGCCCAGCTGGCTGGAAACCTGGCAGTGATACCATCAAGCCTGA
TGTCAATAAGAGTAAAGAGTATTTCTCTAAGCAGAAGTGA

Library Parental gene expression (RPM)
SRP017611_liver 185 .37 RPM
SRP017611_kidney 179 .55 RPM
SRP017611_brain 23 .01 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000013632 ortholog_one2one 2 retrogenes
retro_amel_1116, retro_amel_539,
Bos taurus ENSBTAG00000003642 ortholog_one2one 2 retrogenes
retro_btau_1299, retro_btau_1446,
Canis familiaris ENSCAFG00000004567 ortholog_one2many 5 retrogenes
retro_cfam_1313, retro_cfam_270, retro_cfam_577, retro_cfam_834, retro_cfam_988,
Choloepus hoffmanni ENSCHOG00000003358 ortholog_one2one 5 retrogenes
retro_chof_1140, retro_chof_134, retro_chof_1714, retro_chof_2035, retro_chof_2450,
Ciona intestinalis ENSCING00000003002 ortholog_one2many 1 retrogene
retro_cint_8,
Callithrix jacchus ENSCJAG00000004807 ortholog_one2one 2 retrogenes
retro_cjac_1201, retro_cjac_2884,
Cavia porcellus ENSCPOG00000014137 ortholog_one2one 3 retrogenes
retro_cpor_1079, retro_cpor_290, retro_cpor_398,
Dasypus novemcinctus ENSDNOG00000018488 ortholog_one2one 1 retrogene
retro_dnov_2071,
Dipodomys ordii ENSDORG00000008975 ortholog_one2one 1 retrogene
retro_dord_727,
Equus caballus ENSECAG00000008678 ortholog_one2many 1 retrogene
retro_ecab_81,
Echinops telfairi ENSETEG00000007922 ortholog_one2one 11 retrogenes
retro_etel_112, retro_etel_1157, retro_etel_1245, retro_etel_1442, retro_etel_1838, retro_etel_2121, retro_etel_2122, retro_etel_308, retro_etel_367, retro_etel_460, retro_etel_556,
Felis catus ENSFCAG00000028484 ortholog_one2one 1 retrogene
retro_fcat_1714,
Homo sapiens ENSG00000117450 ortholog_one2one 1 retrogene
retro_hsap_4230,
Macropus eugenii ENSMEUG00000006820 ortholog_one2one 4 retrogenes
retro_meug_1694, retro_meug_1711, retro_meug_2059, retro_meug_662,
Macaca mulatta ENSMMUG00000006221 ortholog_one2one 1 retrogene
retro_mmul_762,
Monodelphis domestica ENSMODG00000002382 ortholog_one2one 2 retrogenes
retro_mdom_1787, retro_mdom_555,
Mus musculus ENSMUSG00000028691 ortholog_one2one 5 retrogenes
retro_mmus_1466, retro_mmus_1659, retro_mmus_1786, retro_mmus_3129, retro_mmus_3167,
Nomascus leucogenys ENSNLEG00000014524 ortholog_one2one 2 retrogenes
retro_nleu_1040, retro_nleu_1627,
Oryctolagus cuniculus ENSOCUG00000005951 ortholog_one2one 2 retrogenes
retro_ocun_1064, retro_ocun_1124,
Otolemur garnettii ENSOGAG00000002303 ortholog_one2many 4 retrogenes
retro_ogar_1219, retro_ogar_1333, retro_ogar_1588, retro_ogar_486,
Pongo abelii ENSPPYG00000001411 ortholog_one2one 1 retrogene
retro_pabe_3409,
Pan troglodytes ENSPTRG00000000675 ortholog_one2one 1 retrogene
retro_ptro_2874,
Pteropus vampyrus ENSPVAG00000015001 ortholog_one2one 1 retrogene
retro_pvam_179,
Rattus norvegicus ENSRNOG00000003520 within_species_paralog 2 retrogenes
retro_rnor_2288, retro_rnor_497,
Sorex araneus ENSSARG00000004703 ortholog_one2one 5 retrogenes
retro_sara_153, retro_sara_370, retro_sara_399, retro_sara_633, retro_sara_95,
Sus scrofa ENSSSCG00000003914 ortholog_one2one 1 retrogene
retro_sscr_719,
Ictidomys tridecemlineatus ENSSTOG00000023413 ortholog_one2one 2 retrogenes
retro_itri_631, retro_itri_817,
Tupaia belangeri ENSTBEG00000015997 ortholog_one2one 4 retrogenes
retro_tbel_3922, retro_tbel_4017, retro_tbel_4024, retro_tbel_4669,
Tarsius syrichta ENSTSYG00000011031 ortholog_one2one 1 retrogene
retro_tsyr_1781,
Tursiops truncatus ENSTTRG00000008858 ortholog_one2many 4 retrogenes
retro_ttru_1350, retro_ttru_1878, retro_ttru_234, retro_ttru_36,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_rnor_1401 70.83 59.30
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2. retro_rnor_1488 92.46 100.00
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3. retro_rnor_1574 99.50 100.00
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4. retro_rnor_1656 89.05 100.00
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5. retro_rnor_1736 71.95 81.41
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6. retro_rnor_2063 87.06 100.00
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7. retro_rnor_2292 88.61 100.00
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8. retro_rnor_2401 94.44 80.40
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Download FASTA sequences of all ENSRNOG00000017194 retrocopies