Parental gene:

Ldhb, ENSRNOG00000013000

Aliases:Ldhb, Ldh2
Description:L-lactate dehydrogenase B chain [Source:UniProtKB/Swiss-Prot;Acc:P42123]
Organism:Rat (Rattus norvegicus)
Coordinates:4:240918027..240936001(-)


>ENSRNOG00000013000
ATGGCAACCCTTAAGGAAAAGCTCATTGCGCCAGTCGCAGACGACGAGACTGCCGTCCCGAACAACAAGATTACTGTAGT
AGGCGTTGGACAAGTTGGAATGGCTTGTGCTATCAGCATTCTGGGGAAGTCTCTGGCTGATGAGCTTGCCCTGGTGGATG
TCTTGGAAGACAAGCTCAAAGGAGAAATGATGGATCTGCAGCACGGGAGCTTATTTCTCCAGACTCCGAAAATCGTGGCT
GATAAAGATTACTCCGTGACAGCCAATTCTAAGATTGTGGTGGTGACCGCGGGAGTCCGCCAGCAGGAGGGGGAGAGTCG
GCTCAACCTGGTGCAGAGAAACGTCAATGTATTCAAGTTCATTATTCCTCAGATCGTCAAGTACAGCCCCGACTGCACCA
TCATCGTGGTTTCCAACCCAGTGGATATTCTTACCTATGTCACCTGGAAGCTGAGCGGGCTACCTAAGCACCGCGTGATT
GGAAGTGGATGCAATCTGGATTCTGCTCGGTTTCGTTACCTCATGGCCGAAAAGCTTGGTATTCATCCCAGCAGCTGCCA
CGGCTGGATCCTGGGCGAGCACGGGGACTCCAGTGTGGCAGTGTGGAGCGGGGTGAATGTGGCAGGAGTCTCCCTCCAGG
AACTGAACCCAGAGATGGGAACGGACAATGACAGCGAGAACTGGAAGGAGGTGCATAAGATGGTGGTGGACAGTGCCTAT
GAAGTCATCAAGCTAAAAGGCTACACCAACTGGGCCATCGGCCTAAGTGTGGCTGACCTCATCGAATCCATGCTGAAAAA
CCTCTCTCGGATTCACCCCGTGTCTACAATGGTGAAGGGAATGTACGGCATCGAGAACGAAGTCTTCCTCAGTCTCCCGT
GCATCCTTAATGCTCGGGGACTGACCAGCGTCATCAACCAGAAGCTGAAGGACGATGAGGTCGCTCAGCTCAGGAAGAGT
GCGGACACCCTGTGGGATATCCAGAAAGACCTCAAGGACCTGTGA

Library Parental gene expression (RPM)
SRP017611_liver 1 .61 RPM
SRP017611_kidney 514 .78 RPM
SRP017611_brain 330 .44 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000016175 possible_ortholog 4 retrogenes
retro_amel_1316, retro_amel_814, retro_amel_882, retro_amel_977,
Canis familiaris ENSCAFG00000012195 possible_ortholog 9 retrogenes
retro_cfam_1068, retro_cfam_111, retro_cfam_1674, retro_cfam_17, retro_cfam_1700, retro_cfam_174, retro_cfam_1836, retro_cfam_701, retro_cfam_93,
Cavia porcellus ENSCPOG00000007138 possible_ortholog 1 retrogene
retro_cpor_762,
Dasypus novemcinctus ENSDNOG00000013620 ortholog_one2one 4 retrogenes
retro_dnov_1161, retro_dnov_1511, retro_dnov_1570, retro_dnov_529,
Felis catus ENSFCAG00000012639 ortholog_one2one 1 retrogene
retro_fcat_462,
Gorilla gorilla ENSGGOG00000015758 ortholog_one2one 1 retrogene
retro_ggor_3033,
Loxodonta africana ENSLAFG00000000972 ortholog_one2one 2 retrogenes
retro_lafr_197, retro_lafr_315,
Macropus eugenii ENSMEUG00000004825 ortholog_one2one 1 retrogene
retro_meug_311,
Microcebus murinus ENSMICG00000017183 ortholog_one2one 2 retrogenes
retro_mmur_275, retro_mmur_300,
Myotis lucifugus ENSMLUG00000012155 possible_ortholog 1 retrogene
retro_mluc_202,
Macaca mulatta ENSMMUG00000002679 possible_ortholog 4 retrogenes
retro_mmul_212, retro_mmul_303, retro_mmul_308, retro_mmul_315,
Monodelphis domestica ENSMODG00000017786 ortholog_one2one 1 retrogene
retro_mdom_1484,
Mus musculus ENSMUSG00000030246 ortholog_one2one 4 retrogenes
retro_mmus_1817, retro_mmus_2035, retro_mmus_2509, retro_mmus_335,
Otolemur garnettii ENSOGAG00000004763 ortholog_one2one 9 retrogenes
retro_ogar_1469, retro_ogar_2093, retro_ogar_2344, retro_ogar_2459, retro_ogar_3288, retro_ogar_3342, retro_ogar_3383, retro_ogar_689, retro_ogar_721,
Pteropus vampyrus ENSPVAG00000002462 ortholog_one2one 3 retrogenes
retro_pvam_1487, retro_pvam_320, retro_pvam_673,
Rattus norvegicus ENSRNOG00000013009 within_species_paralog 17 retrogenes
retro_rnor_1131, retro_rnor_1336, retro_rnor_1738, retro_rnor_1769, retro_rnor_1881, retro_rnor_2146, retro_rnor_2377, retro_rnor_2560, retro_rnor_2830, retro_rnor_2950, retro_rnor_2957, retro_rnor_2984, retro_rnor_490, retro_rnor_491, retro_rnor_563, retro_rnor_578, retro_rnor_843,
Rattus norvegicus ENSRNOG00000013103 within_species_paralog 2 retrogenes
retro_rnor_2081, retro_rnor_499,
Sus scrofa ENSSSCG00000000576 possible_ortholog 1 retrogene
retro_sscr_37,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_rnor_2697 56.04 61.08
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2. retro_rnor_2749 50.83 71.56
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3. retro_rnor_2834 75.85 87.72
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Download FASTA sequences of all ENSRNOG00000013000 retrocopies