Parental gene: | Tmem183a, ENSRNOG00000003594 |
| Aliases: | Tmem183a, RGD1309892, Tmem183 |
| Description: | Transmembrane protein 183 [Source:UniProtKB/Swiss-Prot;Acc:Q68FS7] |
| Organism: | Rat (Rattus norvegicus) |
| Coordinates: | 13:56242446..56257679(-) |
>ENSRNOG00000003594
ATGGCCCGGGGCCCCGGCCAGCTAAGCGGGCCTCGTCCGGACACCGTCACCATGCCCAAGAGAGGAAAGCGGCTCAAGTT
CCGGGCCCACGACGCCTGCTCTGGCCGAGTGACTGTGGCGGACTATGCCAACTCGGATCCGGCGGTGGTGAGGTCTGGAC
GGGTCAAGAAAGCCGTGGCCAACGCTGTTCAGCAGGAAGTAAAATCTCTCTGTGGCTTGGAAGCGTCCCAGGTTCCTGCG
GAAGAGGCTCTCTCTGGGGTGGGTGAGCCGAGTGACATCTTGGACAGCAGTGATGAGATGGACGCCCAGGAGGAAAGCAC
TCAGGAAAGATCTGTCTCCAGAAAAAAGAAAAGCAAGAGACACAAAGAAGACCTGGATGGGGCTGGAGGAGAAGAGTATC
CTATGGATATTTGGCTGTTGCTGGCTTCCTATATCCGTCCTGAGGACATTGTGAATTTTTCCCTGATTTGTAAGAATGCT
TGGACTGTCACTTGCACTGCTGCCTTTTGGACCAGGTTGTACCGAAGGCACTACACGCTGGATGCTTCTCTACCTTTGCG
GCTGCGACCAGAGTCCATGGAGAAGCTGCGCTGTCTCCGGGCATGTGTGATCCGATCTCTGTACCATATGTATGAACCGT
TTGCTGCTCGAATCTCCAAGAATCCTGCCATTCCAGAAAGCACTCCCAGCACACTGAAGAATTCCAAATGCTTACTTTTC
TGGTGCAGAAAGATTGTTGGGAACAGACAAGAACCAATGTGGGAGTTCAACTTCAAGTTCAAAAAACAGTCCCCTAGATT
AAAGAGCAAGTGTATGGAACGGTTGCAACCGCCCATTCAGTATCAAGATGTTCACACCAACCCTGACCAGGACTGCTGCC
TGCTGCAGGTCACCACCCTCAACTTCATCTTTATTCCTATTGTCATGGGAATGATATTTACCTTGTTTACTATTAATGTG
AGTACAGACATGCGGCATCATCGAGTGAGACTGGTGTTCCAAGATTCTCCCGTCCGTGGTGGTCAGCATCTGCGCAGTGA
ACAGGGTGTGCAAGTCGTCCTGGACCCAGTGCACAGTGTTCGGCTCTTTGACTGGTGGCATCCGCAGTATCCGTTCTCCC
TGAGAGCATAG
ATGGCCCGGGGCCCCGGCCAGCTAAGCGGGCCTCGTCCGGACACCGTCACCATGCCCAAGAGAGGAAAGCGGCTCAAGTT
CCGGGCCCACGACGCCTGCTCTGGCCGAGTGACTGTGGCGGACTATGCCAACTCGGATCCGGCGGTGGTGAGGTCTGGAC
GGGTCAAGAAAGCCGTGGCCAACGCTGTTCAGCAGGAAGTAAAATCTCTCTGTGGCTTGGAAGCGTCCCAGGTTCCTGCG
GAAGAGGCTCTCTCTGGGGTGGGTGAGCCGAGTGACATCTTGGACAGCAGTGATGAGATGGACGCCCAGGAGGAAAGCAC
TCAGGAAAGATCTGTCTCCAGAAAAAAGAAAAGCAAGAGACACAAAGAAGACCTGGATGGGGCTGGAGGAGAAGAGTATC
CTATGGATATTTGGCTGTTGCTGGCTTCCTATATCCGTCCTGAGGACATTGTGAATTTTTCCCTGATTTGTAAGAATGCT
TGGACTGTCACTTGCACTGCTGCCTTTTGGACCAGGTTGTACCGAAGGCACTACACGCTGGATGCTTCTCTACCTTTGCG
GCTGCGACCAGAGTCCATGGAGAAGCTGCGCTGTCTCCGGGCATGTGTGATCCGATCTCTGTACCATATGTATGAACCGT
TTGCTGCTCGAATCTCCAAGAATCCTGCCATTCCAGAAAGCACTCCCAGCACACTGAAGAATTCCAAATGCTTACTTTTC
TGGTGCAGAAAGATTGTTGGGAACAGACAAGAACCAATGTGGGAGTTCAACTTCAAGTTCAAAAAACAGTCCCCTAGATT
AAAGAGCAAGTGTATGGAACGGTTGCAACCGCCCATTCAGTATCAAGATGTTCACACCAACCCTGACCAGGACTGCTGCC
TGCTGCAGGTCACCACCCTCAACTTCATCTTTATTCCTATTGTCATGGGAATGATATTTACCTTGTTTACTATTAATGTG
AGTACAGACATGCGGCATCATCGAGTGAGACTGGTGTTCCAAGATTCTCCCGTCCGTGGTGGTCAGCATCTGCGCAGTGA
ACAGGGTGTGCAAGTCGTCCTGGACCCAGTGCACAGTGTTCGGCTCTTTGACTGGTGGCATCCGCAGTATCCGTTCTCCC
TGAGAGCATAG
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_liver | 52 .92 RPM |
| SRP017611_kidney | 127 .35 RPM |
| SRP017611_brain | 61 .11 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Echinops telfairi | ENSETEG00000008318 | possible_ortholog | 1 retrogene | |
| Felis catus | ENSFCAG00000013106 | ortholog_one2many | 1 retrogene | |
| Homo sapiens | ENSG00000163444 | ortholog_one2one | 3 retrogenes | |
| Gorilla gorilla | ENSGGOG00000009834 | ortholog_one2one | 2 retrogenes | |
| Loxodonta africana | ENSLAFG00000018443 | ortholog_one2one | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000000801 | ortholog_one2many | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000018106 | ortholog_one2one | 2 retrogenes | |
| Otolemur garnettii | ENSOGAG00000000911 | ortholog_one2many | 1 retrogene | |
| Pongo abelii | ENSPPYG00000000340 | ortholog_one2one | 2 retrogenes | |
| Pan troglodytes | ENSPTRG00000001864 | ortholog_one2one | 2 retrogenes | |
| Sus scrofa | ENSSSCG00000015473 | ortholog_one2one | 1 retrogene | |
| Ictidomys tridecemlineatus | ENSSTOG00000012466 | ortholog_one2one | 1 retrogene | |
| Tarsius syrichta | ENSTSYG00000007009 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_rnor_1954 | 74.27 | 62.77 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_rnor_2386 | 82.54 | 66.49 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSRNOG00000003594 retrocopies