Parental gene:

PDHA1, ENSPTRG00000021717

Aliases:None
Description:Pan troglodytes pyruvate dehydrogenase (lipoamide) alpha 1 (PDHA1), nuclear gene encoding mitochondrial protein, mRNA. [Source:RefSeq mRNA;Acc:NM_001110813]
Organism:Chimpanzee (Pan troglodytes)
Coordinates:X:19531404..19548122(+)


>ENSPTRG00000021717
ATGAGGAAGATGCTCGCCGCCGTCTCCCGCGTGCTGTCTGGCGCTTCTCAGAAGCCGGCAAGCAGAGTGCTGGTAGCATC
CCGTAATTTTGCAAATGATGCTACATTTGAAATTAAGAAATGTGACCTTCACCGGCTGGAAGAAGGCCCTCCTGTCACAA
CAGTGCTCACCAGGGAGGATGGGCTCAAATACTACAGGATGATGCAGACTGTACGCCGAATGGAGTTGAAAGCAGATCAG
CTGTATAAACAGAAAATTATTCGTGGTTTCTGTCACTTATGTGATGGTCAGGAAGCTTGCTGTGTGGGCCTGGAGGCCGG
CATCAACCCCACAGACCATCTCATCACAGCCTACCGGGCTCACGGCTTTACTTTCACCAGGGGCCTTTCCGTCCGAGAAA
TTCTCGCAGAGCTTACAGGACGAAAAGGAGGTTGTGCTAAAGGGAAAGGAGGATCGATGCACATGTATGCCAAGAACTTC
TACGGGGGCAATGGCATCGTGGGAGCGCAGGTGCCCCTGGGCGCTGGGATTGCTCTAGCCTGTAAGTATAATGGAAAAGA
TGAGGTCTGCCTGACTTTATATGGCGATGGTGCTGCTAACCAGGGCCAGATATTCGAAGCTTACAACATGGCAGCTTTGT
GGAAATTACCTTGTATTTTCATCTGTGAGAATAATCGCTATGGAATGGGAACGTCTGTTGAGAGAGCAGCAGCCAGCACT
GATTACTACAAGAGAGGCGATTTCATTCCTGGGCTGAGAGTGGATGGAATGGATATCCTGTGCGTCCGAGAGGCGACAAG
GTTTGCTGCTGCCTATTGTAGATCTGGGAAGGGGCCCATCCTGATGGAGCTGCAGACTTACCGTTACCATGGACACAGTA
TGAGTGATCCTGGAGTCAGTTACCGTACACGAGAAGAAATTCAGGAAGTAAGAAGTAAGAGTGACCCTATTATGCTTCTC
AAGGACAGGATGGTGAACAGCAATCTTGCCAGTGTGGAAGAACTAAAGGAAATTGATGTGGAAGTGAGGAAGGAGATTGA
GGATGCTGCCCAGTTTGCCACGGCCGATCCTGAGCCGCCTTTGGAAGAGCTGGGCTACCACATCTACTCCAGTGACCCAC
CTTTTGAAGTTCGTGGTGCCAATCAGTGGATCAAGTTTAAGTCAGTCAGTTAA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 34 .71 RPM
SRP007412_cerebellum 32 .01 RPM
SRP007412_heart 123 .43 RPM
SRP007412_kidney 67 .21 RPM
SRP007412_liver 25 .27 RPM
SRP007412_testis 7 .90 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000016730 ortholog_one2one 1 retrogene
retro_amel_400,
Bos taurus ENSBTAG00000019852 ortholog_one2one 2 retrogenes
retro_btau_100, retro_btau_1807,
Callithrix jacchus ENSCJAG00000005496 ortholog_one2one 2 retrogenes
retro_cjac_2414, retro_cjac_27,
Dipodomys ordii ENSDORG00000011848 ortholog_one2one 1 retrogene
retro_dord_35,
Equus caballus ENSECAG00000001964 ortholog_one2one 1 retrogene
retro_ecab_21,
Erinaceus europaeus ENSEEUG00000005485 ortholog_one2one 1 retrogene
retro_eeur_580,
Homo sapiens ENSG00000131828 ortholog_one2one 1 retrogene
retro_hsap_41,
Gorilla gorilla ENSGGOG00000013574 ortholog_one2one 1 retrogene
retro_ggor_59,
Myotis lucifugus ENSMLUG00000012932 ortholog_one2one 2 retrogenes
retro_mluc_2363, retro_mluc_323,
Macaca mulatta ENSMMUG00000017336 ortholog_one2many 1 retrogene
retro_mmul_123,
Mustela putorius furo ENSMPUG00000003269 ortholog_one2one 1 retrogene
retro_mputfur_812,
Mus musculus ENSMUSG00000031299 ortholog_one2one 2 retrogenes
retro_mmus_63, retro_mmus_631,
Nomascus leucogenys ENSNLEG00000009805 ortholog_one2one 1 retrogene
retro_nleu_74,
Oryctolagus cuniculus ENSOCUG00000014748 ortholog_one2one 1 retrogene
retro_ocun_264,
Pongo abelii ENSPPYG00000020171 ortholog_one2one 1 retrogene
retro_pabe_129,
Pteropus vampyrus ENSPVAG00000005420 ortholog_one2one 1 retrogene
retro_pvam_1306,
Sarcophilus harrisii ENSSHAG00000015375 ortholog_many2many 1 retrogene
retro_shar_84,
Sus scrofa ENSSSCG00000023643 ortholog_one2one 2 retrogenes
retro_sscr_1015, retro_sscr_281,
Ictidomys tridecemlineatus ENSSTOG00000015433 ortholog_one2one 1 retrogene
retro_itri_1529,
Tupaia belangeri ENSTBEG00000014313 ortholog_one2one 1 retrogene
retro_tbel_3327,
Tursiops truncatus ENSTTRG00000000660 ortholog_one2one 1 retrogene
retro_ttru_1427,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ptro_79 85.57 99.23
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Download FASTA sequences of all ENSPTRG00000021717 retrocopies