Parental gene:

PDHA1, ENSCJAG00000005496

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:X:17635591..17652178(+)


>ENSCJAG00000005496
ATGAGGAAGATGCTCGCCGCAGTCTCCCGCGTGTTGTCTGGTGCTTCCCAGAAGCCGAGCCATGGTCTCGCTCTGTTGTC
CAGTCTGGTGTCCAACTCCAGGCTCAAGCAGTCCTCCCACTTCGGCCTCCCAAAGTGCTGGGATTACTCTCACTCTCTAA
AAGGCAGGCAGAAGATTGCCATTGCAAGCAGAGTGCTGGTAGCATCCCGTAATTTTGCAAATGATGCTACATTTGAAATT
AAGAAATGTGACCTTCACCGGCTGGAAGAAGGCCCTCCTGTCACAACAGTGCTCACCAGGGAGGATGGGCTCAAATACTA
CAGGATGATGCAGACTGTGCGCCGAATGGAGTTAAAAGCAGACCAGCTGTATAAACAGAAAATTATTCGCGGTTTCTGTC
ACCTGTGTGATGGTCAGGAAGCTTGCTGTGTGGGCCTGGAAGCCGGCATAAACCCCACAGACCATCTCATCACAGCCTAC
CGGGCTCATGGCTTTACCTTCACCCGGGGCCTTTCTGTCCGAGAAATTCTCGCAGAGCTAACAGGACGAAAAGGAGGTTG
TGCTAAAGGGAAAGGAGGATCGATGCACATGTATGCCAAGAACTTCTACGGGGGTAATGGCATCGTGGGAGCACAGGTGC
CCCTGGGTGCTGGGATTGCTCTAGCCTGTAAGTATAATGGAAAAGATGAGGTCTGCCTGACTTTATATGGTGATGGCGCT
GCTAATCAGGGCCAGATCTTCGAAGCTTACAACATGGCAGCTCTGTGGAAATTACCTTGTATTTTCATCTGTGAAAATAA
CCGCTATGGAATGGGAACATCTGTTGAGAGAGCAGCAGCCAGCACTGATTACTACAAGAGAGGGGATTTCATTCCTGGGT
TGAGAGTGGATGGAATGGATATCCTGTGTGTCCGAGAGGCGACAAGGTTTGCCGCTGCCTATTGTAGATCTGGGAAGGGG
CCCATCCTGATGGAACTGCAGACTTATCGTTACCACGGACACAGCATGAGTGATCCTGGAGTCAGTTACCGTACACGAGA
AGAAATTCAGGAAGTAAGAAGCAAGAGTGACCCTATTATGCTTCTCAAGGACAGGATGGTGAACAGCAATCTTGCCAGTG
TGGAAGAATTAAAGGAAATTGATGTGGAAGTGAGGAAGGAAATTGAGGATGCTGCCCAGTTTGCCACAGCCGATCCTGAG
CCGCCTTTGGAGGAGCTGGGCTACCACATCTACTCCAGTGACCCACCTTTCGAAGTCCGTGGTGCCAATCAGTGGATCAA
GTTTAAGTCAGTCAGTTAA

Library Parental gene expression (RPM)
SRP051959_spleen 15 .00 RPM
SRP051959_skeletal_muscle 46 .43 RPM
SRP051959_lymph_node 14 .70 RPM
SRP051959_lung 18 .79 RPM
SRP051959_liver 40 .20 RPM
SRP051959_kidney 43 .55 RPM
SRP051959_heart 90 .09 RPM
SRP051959_colon 21 .10 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000016730 ortholog_one2one 1 retrogene
retro_amel_400,
Bos taurus ENSBTAG00000019852 ortholog_one2one 2 retrogenes
retro_btau_100, retro_btau_1807,
Dipodomys ordii ENSDORG00000011848 ortholog_one2one 1 retrogene
retro_dord_35,
Equus caballus ENSECAG00000001964 ortholog_one2one 1 retrogene
retro_ecab_21,
Erinaceus europaeus ENSEEUG00000005485 ortholog_one2one 1 retrogene
retro_eeur_580,
Homo sapiens ENSG00000131828 ortholog_one2one 1 retrogene
retro_hsap_41,
Gorilla gorilla ENSGGOG00000013574 ortholog_one2one 1 retrogene
retro_ggor_59,
Myotis lucifugus ENSMLUG00000012932 ortholog_one2one 2 retrogenes
retro_mluc_2363, retro_mluc_323,
Macaca mulatta ENSMMUG00000017336 ortholog_one2many 1 retrogene
retro_mmul_123,
Mustela putorius furo ENSMPUG00000003269 ortholog_one2one 1 retrogene
retro_mputfur_812,
Mus musculus ENSMUSG00000031299 ortholog_one2one 2 retrogenes
retro_mmus_63, retro_mmus_631,
Nomascus leucogenys ENSNLEG00000009805 ortholog_one2one 1 retrogene
retro_nleu_74,
Oryctolagus cuniculus ENSOCUG00000014748 ortholog_one2one 1 retrogene
retro_ocun_264,
Pongo abelii ENSPPYG00000020171 ortholog_one2one 1 retrogene
retro_pabe_129,
Pan troglodytes ENSPTRG00000021717 ortholog_one2one 1 retrogene
retro_ptro_79,
Pteropus vampyrus ENSPVAG00000005420 ortholog_one2one 1 retrogene
retro_pvam_1306,
Sarcophilus harrisii ENSSHAG00000015375 ortholog_many2many 1 retrogene
retro_shar_84,
Sus scrofa ENSSSCG00000023643 ortholog_one2one 2 retrogenes
retro_sscr_1015, retro_sscr_281,
Ictidomys tridecemlineatus ENSSTOG00000015433 ortholog_one2one 1 retrogene
retro_itri_1529,
Tupaia belangeri ENSTBEG00000014313 ortholog_one2one 1 retrogene
retro_tbel_3327,
Tursiops truncatus ENSTTRG00000000660 ortholog_one2one 1 retrogene
retro_ttru_1427,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_27 83.51 99.23
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2. retro_cjac_2414 79.80 68.52
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Download FASTA sequences of all ENSCJAG00000005496 retrocopies