Parental gene:

SDCBP, ENSPTRG00000020277

Aliases:SDCBP, syntenin-1
Description:Pan troglodytes syndecan binding protein (syntenin) (SDCBP), mRNA. [Source:RefSeq mRNA;Acc:NM_001246446]
Organism:Chimpanzee (Pan troglodytes)
Coordinates:8:56287155..56314742(+)


>ENSPTRG00000020277
ATGATAAAGCTATGGACAAATAGAGACCTGCATATTATTGTAATGGTGAAGAATCCTGCAAAAATGTCTCTCTATCCATC
TCTCGAAGACTTGAAGGTAGACAAAGTAATTCAGGCTCAAACTGCTTTTTCTGCAAACCCTGCCAATCCAGCAATTTTGT
CAGAAGCTTCTGCTCCTATCCCTCACGATGGAAATCTCTATCCCAGACTGTATCCGGAGCTCTCTCAATACATGGGGCTG
AGTTTAAATGAAGAAGAAATACGTGCAAATGTGGCCGTGGTTTCTGGTGCACCACTTCAGGGGTTGGTAGCAAGACCTTC
CAGTATAAACTATATGGTGGCTCCTGTAACTGGTAATGATGTTGGAATTCGTAGAGCAGAAATTAAGCAAGGGATTCGTG
AAGTCATTTTGTGTAAGGATCAAGATGGAAAAATTGGACTCAGGCTTAAATCAATAGATAATGGTATATTTGTTCAGCTA
GTCCAGGCTAATTCTCCAGCCTCATTGGTTGGTCTGAGATTTGGGGACCAAGTACTTCAGATCAATGGTGAAAACTGTGC
AGGATGGAGCTCTGATAAAGCGCACAAGGTGCTCAAACAGGCTTTTGGAGAGAAGATTACCATGACCATTCGTGACAGGC
CCTTTGAACGGACGATTACCATGCATAAGGATAGCACTGGACATGTTGGTTTTATCTTTAAAAATGGAAAAATAACATCC
ATAGTGAAAGATAGCTCTGCAGCCAGAAATGGTCTTCTCACGGAACATAACATCTGTGAAATCAATGGACAGAATGTCAT
TGGATTGAAGGACTCTCAAATTGCAGACATACTGTCAACATCTGGGACTGTAGTTACTATTACAATCATGCCTGCTTTTA
TCTTTGAACATATTATTAAGCGGATGGCACCAAGCATTATGAAAAGCCTAATGGACCACACCATTCCTGAGGTTTAA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 56 .39 RPM
SRP007412_cerebellum 35 .60 RPM
SRP007412_heart 68 .96 RPM
SRP007412_kidney 65 .75 RPM
SRP007412_liver 52 .05 RPM
SRP007412_testis 36 .67 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000006161 ortholog_one2one 1 retrogene
retro_amel_654,
Bos taurus ENSBTAG00000019910 ortholog_one2one 2 retrogenes
retro_btau_1035, retro_btau_383,
Canis familiaris ENSCAFG00000007112 ortholog_one2many 1 retrogene
retro_cfam_112,
Choloepus hoffmanni ENSCHOG00000003565 ortholog_one2one 5 retrogenes
retro_chof_1063, retro_chof_1151, retro_chof_1910, retro_chof_713, retro_chof_970,
Equus caballus ENSECAG00000015053 ortholog_one2one 1 retrogene
retro_ecab_439,
Homo sapiens ENSG00000137575 ortholog_one2one 2 retrogenes
retro_hsap_3971, retro_hsap_4810,
Gorilla gorilla ENSGGOG00000009019 ortholog_one2one 2 retrogenes
retro_ggor_2666, retro_ggor_2995,
Loxodonta africana ENSLAFG00000010757 ortholog_one2one 1 retrogene
retro_lafr_1044,
Microcebus murinus ENSMICG00000003968 ortholog_one2one 1 retrogene
retro_mmur_170,
Myotis lucifugus ENSMLUG00000004807 ortholog_one2many 1 retrogene
retro_mluc_12,
Macaca mulatta ENSMMUG00000017296 ortholog_one2many 1 retrogene
retro_mmul_2564,
Mustela putorius furo ENSMPUG00000010339 ortholog_one2many 5 retrogenes
retro_mputfur_1055, retro_mputfur_1340, retro_mputfur_292, retro_mputfur_829, retro_mputfur_933,
Nomascus leucogenys ENSNLEG00000001408 ortholog_one2one 2 retrogenes
retro_nleu_2185, retro_nleu_2525,
Otolemur garnettii ENSOGAG00000013462 ortholog_one2one 1 retrogene
retro_ogar_3259,
Procavia capensis ENSPCAG00000016432 ortholog_one2one 1 retrogene
retro_pcap_186,
Pongo abelii ENSPPYG00000018612 ortholog_one2one 3 retrogenes
retro_pabe_3265, retro_pabe_3266, retro_pabe_3738,
Tupaia belangeri ENSTBEG00000013965 ortholog_one2one 1 retrogene
retro_tbel_2142,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ptro_2696 85.31 55.03
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2. retro_ptro_3200 89.44 94.97
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Download FASTA sequences of all ENSPTRG00000020277 retrocopies