Parental gene:

SDCBP, ENSG00000137575

Aliases:SDCBP, MDA-9, ST1, SYCL, TACIP18
Description:syndecan binding protein (syntenin) [Source:HGNC Symbol;Acc:10662]
Organism:Human (Homo sapiens)
Coordinates:8:59465482..59495419(+)


>ENSG00000137575
ATGTCTCTCTATCCATCTCTCGAAGACTTGAAGGTAGACAAAGTAATTCAGGCTCAAACTGCTTTTTCTGCAAACCCTGC
CAATCCAGCAATTTTGTCAGAAGCTTCTGCTCCTATCCCTCACGATGGAAATCTCTATCCCAGACTGTATCCAGAGCTCT
CTCAATACATGGGGCTGAGTTTAAATGAAGAAGAAATACGTGCAAATGTGGCCGTGGTTTCTGGTGCACCACTTCAGGGG
CAGTTGGTAGCAAGACCTTCCAGTATAAACTATATGGTGGCTCCTGTAACTGGTAATGATGTTGGAATTCGTAGAGCAGA
AATTAAGCAAGGGATTCGTGAAGTCATTTTGTGTAAGGATCAAGATGGAAAAATTGGACTCAGGCTTAAATCAATAGATA
ATGGTATATTTGTTCAGCTAGTCCAGGCTAATTCTCCAGCCTCATTGGTTGGTCTGAGATTTGGGGACCAAGTACTTCAG
ATCAATGGTGAAAACTGTGCAGGATGGAGCTCTGATAAAGCGCACAAGGTGCTCAAACAGGCTTTTGGAGAGAAGATTAC
CATGACCATTCGTGACAGGCCCTTTGAACGGACGATTACCATGCATAAGGATAGCACTGGACATGTTGGTTTTATCTTTA
AAAATGGAAAAATAACATCCATAGTGAAAGATAGCTCTGCAGCCAGAAATGGTCTTCTCACGGAACATAACATCTGTGAA
ATCAATGGACAGAATGTCATTGGATTGAAGGACTCTCAAATTGCAGACATACTGTCAACATCTGGGACTGTAGTTACTAT
TACAATCATGCCTGCTTTTATCTTTGAACATATTATTAAGCGGATGGCACCAAGCATTATGAAAAGCCTAATGGACCACA
CCATTCCTGAGGTTTAA

Library Parental gene expression (RPM)
bodymap2_liver 77 .48 RPM
bodymap2_lung 592 .44 RPM
bodymap2_breast 291 .15 RPM
bodymap2_adipose 454 .71 RPM
bodymap2_adrenal 260 .60 RPM
bodymap2_skeletal_muscle 71 .77 RPM
bodymap2_thyroid 186 .32 RPM
bodymap2_prostate 248 .23 RPM
bodymap2_colon 376 .18 RPM
bodymap2_testis 178 .84 RPM
bodymap2_brain 171 .89 RPM
bodymap2_heart 155 .39 RPM
bodymap2_white_blood_cells 721 .54 RPM
bodymap2_lymph_node 377 .22 RPM
bodymap2_ovary 193 .13 RPM
bodymap2_kidney 203 .27 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000006161 ortholog_one2one 1 retrogene
retro_amel_654,
Bos taurus ENSBTAG00000019910 ortholog_one2one 2 retrogenes
retro_btau_1035, retro_btau_383,
Canis familiaris ENSCAFG00000007112 ortholog_one2many 1 retrogene
retro_cfam_112,
Choloepus hoffmanni ENSCHOG00000003565 ortholog_one2one 5 retrogenes
retro_chof_1063, retro_chof_1151, retro_chof_1910, retro_chof_713, retro_chof_970,
Equus caballus ENSECAG00000015053 ortholog_one2one 1 retrogene
retro_ecab_439,
Gorilla gorilla ENSGGOG00000009019 ortholog_one2one 2 retrogenes
retro_ggor_2666, retro_ggor_2995,
Loxodonta africana ENSLAFG00000010757 ortholog_one2one 1 retrogene
retro_lafr_1044,
Microcebus murinus ENSMICG00000003968 ortholog_one2one 1 retrogene
retro_mmur_170,
Myotis lucifugus ENSMLUG00000004807 ortholog_one2many 1 retrogene
retro_mluc_12,
Macaca mulatta ENSMMUG00000017296 ortholog_one2many 1 retrogene
retro_mmul_2564,
Mustela putorius furo ENSMPUG00000010339 ortholog_one2many 5 retrogenes
retro_mputfur_1055, retro_mputfur_1340, retro_mputfur_292, retro_mputfur_829, retro_mputfur_933,
Nomascus leucogenys ENSNLEG00000001408 ortholog_one2one 2 retrogenes
retro_nleu_2185, retro_nleu_2525,
Otolemur garnettii ENSOGAG00000013462 ortholog_one2one 1 retrogene
retro_ogar_3259,
Procavia capensis ENSPCAG00000016432 ortholog_one2one 1 retrogene
retro_pcap_186,
Pongo abelii ENSPPYG00000018612 ortholog_one2one 3 retrogenes
retro_pabe_3265, retro_pabe_3266, retro_pabe_3738,
Pan troglodytes ENSPTRG00000020277 ortholog_one2one 2 retrogenes
retro_ptro_2696, retro_ptro_3200,
Tupaia belangeri ENSTBEG00000013965 ortholog_one2one 1 retrogene
retro_tbel_2142,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_hsap_3971 84.75 55.03
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2. retro_hsap_4810 89.44 94.97
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Download FASTA sequences of all ENSG00000137575 retrocopies