Parental gene:

SRSF3, ENSPTRG00000018106

Aliases:None
Description:None
Organism:Chimpanzee (Pan troglodytes)
Coordinates:6:37070169..37077755(+)


>ENSPTRG00000018106
ATGCATCGTGATTCCTGTCCATTGGACTGTAAGGTTTATGTAGGCAATCTTGGAAACAATGGCAACAAGACCGAATTGGA
ACGGGCTTTTGGCTACTATGGACCACTCCGAAGTGTGTGGGTTGCTAGAAACCCACCCGGCTTTGCTTTTGTTGAATTTG
AAGATCCCCGAGATGCAGCTGATGCAGTCCGAGAGCTAGATGGAAGAACACTATGTGGCTGCCGTGTAAGAGTGGAACTG
TCGAATGGTGAAAAAAGAAGTAGAAATCGTGGCCCACCTCCCTCTTGGGGTCGTCGCCCTCGAGATGATTATCGTAGGAG
GAGTCCTCCACCTCGTCGCAGATCTCCAAGGAGGAGAAGCTTCTCTCGCAGCCGGAGCAGGTCCCTTTCTAGAGATAGGA
GAAGAGAGAGATCGCTGTCTCGGGAGAGAAATCACAAGCCGTCCCGATCCTTCTCTAGGTCTCGTAGTCGATCTAGGTCA
AATGAAAGGAAATAG

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 29 .10 RPM
SRP007412_cerebellum 100 .77 RPM
SRP007412_heart 63 .28 RPM
SRP007412_kidney 62 .35 RPM
SRP007412_liver 71 .98 RPM
SRP007412_testis 147 .22 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000016062 possible_ortholog 5 retrogenes
retro_cjac_1035, retro_cjac_1969, retro_cjac_2006, retro_cjac_620, retro_cjac_746,
Dasypus novemcinctus ENSDNOG00000000421 ortholog_one2one 9 retrogenes
retro_dnov_1326, retro_dnov_1513, retro_dnov_1702, retro_dnov_1951, retro_dnov_2153, retro_dnov_2328, retro_dnov_2491, retro_dnov_569, retro_dnov_784,
Equus caballus ENSECAG00000018741 ortholog_one2one 2 retrogenes
retro_ecab_178, retro_ecab_961,
Gorilla gorilla ENSGGOG00000017186 ortholog_one2one 5 retrogenes
retro_ggor_1654, retro_ggor_1706, retro_ggor_2030, retro_ggor_2746, retro_ggor_630,
Loxodonta africana ENSLAFG00000018193 possible_ortholog 2 retrogenes
retro_lafr_1219, retro_lafr_80,
Myotis lucifugus ENSMLUG00000010671 possible_ortholog 6 retrogenes
retro_mluc_1205, retro_mluc_1312, retro_mluc_1554, retro_mluc_2283, retro_mluc_278, retro_mluc_51,
Mus musculus ENSMUSG00000071172 possible_ortholog 9 retrogenes
retro_mmus_100, retro_mmus_1347, retro_mmus_1749, retro_mmus_2294, retro_mmus_2337, retro_mmus_2433, retro_mmus_2654, retro_mmus_2933, retro_mmus_3629,
Oryctolagus cuniculus ENSOCUG00000006684 ortholog_one2one 3 retrogenes
retro_ocun_415, retro_ocun_772, retro_ocun_970,
Otolemur garnettii ENSOGAG00000000502 ortholog_one2one 6 retrogenes
retro_ogar_1850, retro_ogar_1959, retro_ogar_2131, retro_ogar_2783, retro_ogar_597, retro_ogar_803,
Pan troglodytes ENSPTRG00000013506 other_paralog 1 retrogene
retro_ptro_3057,
Sus scrofa ENSSSCG00000001564 possible_ortholog 1 retrogene
retro_sscr_1038,
Ictidomys tridecemlineatus ENSSTOG00000014280 possible_ortholog 5 retrogenes
retro_itri_123, retro_itri_502, retro_itri_664, retro_itri_857, retro_itri_901,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ptro_533 96.04 61.59
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2. retro_ptro_1566 80.13 91.46
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3. retro_ptro_1628 90.06 98.17
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4. retro_ptro_2776 61.25 95.12
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Download FASTA sequences of all ENSPTRG00000018106 retrocopies