Parental gene:

PSMB8, ENSPTRG00000018022

Aliases:None
Description:Proteasome subunit beta type [Source:UniProtKB/TrEMBL;Acc:H2QSR8]
Organism:Chimpanzee (Pan troglodytes)
Coordinates:6:33249875..33253192(-)


>ENSPTRG00000018022
ATGGCGCTACTGGATGTATGCGGAGCCCCCCGAGGGCAGCGGCCGGAATGGGCTCTCCCGGTTGCGGGAAGCGGGCGTCG
CTCGGACCCAGGACACTACAGTTTCTCTGTGCGATCTCCAGAGCTCGCCTTACCCCGGGGAATGCAGCCCACAGAATTCT
TCCAGTCCCTGGGTGGGGACGGAGAAAGGAACGTTCAGATTGAGATGGCCCATGGCACCACCACGCTCGCCTTCAAGTTC
CAGCATGGAGTGATTGCAGCAGTGGATTCTCGGGCCTCAGCTGGGTCCTACATTAGTGCCTTACGGGTGAACAAGGTGAT
TGAGATTAACCCTTACCTGCTTGGCACCATGTCTGGCTCTGCAGCAGACTGTCAGTACTGGGAGCGCCTGCTGGCCAAAG
AATGCAGGCTGTACTATCTGCGAAATGGAGAACGTATTTCAGTGTCGGCAGCCTCCAAGCTGCTGTCCAACATGATGTGC
CAGTACCGGGGCATGGGCCTCTCTATGGGCAGCATGATCTGTGGCTGGGATAAGAAGGGTCCTGGACTCTACTACGTGGA
TGAACATGGGACTCGGCTCTCAGGAAATATGTTCTCCACGGGTAGTGGGAACACTTATGCCTACGGGGTCATGGACAGTG
GCTATCGGCCTAATCTTAGCCCTGAAGAGGCCTATGACCTTGGCCGCAGGGCTATTGCTTATGCCACTCACAGAGACAGC
TACTCTGGAGGCGTTGTCAATATGTACCACATGAAGGAAGATGGTTGGGTGAAAGTAGAAAGCACAGATGTCAGTGACCT
GCTGCACCAGTACCGGGAAGCCAATCAATAA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 6 .13 RPM
SRP007412_cerebellum 14 .45 RPM
SRP007412_heart 30 .43 RPM
SRP007412_kidney 151 .92 RPM
SRP007412_liver 381 .98 RPM
SRP007412_testis 1 .58 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000002026 ortholog_one2one 1 retrogene
retro_amel_27,
Bos taurus ENSBTAG00000003039 ortholog_one2one 1 retrogene
retro_btau_11,
Canis familiaris ENSCAFG00000000829 ortholog_one2one 1 retrogene
retro_cfam_75,
Equus caballus ENSECAG00000018887 ortholog_one2one 1 retrogene
retro_ecab_18,
Felis catus ENSFCAG00000023131 ortholog_one2one 1 retrogene
retro_fcat_30,
Loxodonta africana ENSLAFG00000003213 ortholog_one2one 1 retrogene
retro_lafr_65,
Microcebus murinus ENSMICG00000015254 ortholog_one2one 1 retrogene
retro_mmur_33,
Myotis lucifugus ENSMLUG00000013876 ortholog_one2one 1 retrogene
retro_mluc_285,
Monodelphis domestica ENSMODG00000014366 ortholog_one2one 1 retrogene
retro_mdom_179,
Otolemur garnettii ENSOGAG00000013830 ortholog_one2one 1 retrogene
retro_ogar_256,
Procavia capensis ENSPCAG00000016741 ortholog_one2one 1 retrogene
retro_pcap_21,
Pteropus vampyrus ENSPVAG00000002800 ortholog_one2one 1 retrogene
retro_pvam_20,
Sus scrofa ENSSSCG00000026951 ortholog_one2many 1 retrogene
retro_sscr_90,
Tupaia belangeri ENSTBEG00000007794 ortholog_one2one 1 retrogene
retro_tbel_2055,
Tarsius syrichta ENSTSYG00000007730 ortholog_one2one 1 retrogene
retro_tsyr_1639,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ptro_97 55.90 70.65
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2. retro_ptro_1102 51.85 76.09
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Download FASTA sequences of all ENSPTRG00000018022 retrocopies