Parental gene:

PSMB8, ENSBTAG00000003039

Aliases:PSMB8, LMP7
Description:Proteasome subunit beta type-8 [Source:UniProtKB/Swiss-Prot;Acc:Q3T112]
Organism:Cow (Bos taurus)
Coordinates:23:7113303..7116676(-)


>ENSBTAG00000003039
ATGGCGCTGCTAGACGTGTGCGGAGCCCCCGGAGGGCAGCGGGGGGACTGGGCTGTGCCCCTCGCGGGAAGCCGGCAGCG
CTCGGACCCCGGCCACTACGGCTTCTCCCTGCGATCTCCGGAGCTCGCCCTCCCCCGGGGCATGCAGCCCACTGAATTCT
TCCGGTCCCTGGGTGGGAATGGAGAAAGTAAGGTGCAGATCGAGATGGCTCATGGCACGACCACGCTGGCCTTCAAGTTC
CAGCATGGGGTGATTGTGGCCGTGGATTCTCGGGCCTCAGCTGGGAATTACATTGCCACATTAAAGGTGAACAAGGTGAT
TGAGATTAACCCTTACCTGCTCGGCACCATGTCCGGCTGTGCGGCTGACTGCTTGTACTGGGAGCGCCTGCTGGCTAAGG
AGTGCAGGCTGTACTATCTGCGGAATGGGGAGCGTATCTCCGTGTCGGCCGCCTCCAAGCTGCTCTCCAACATGATGTGC
CAGTACCGGGGCATGGGCCTCTCCATGGGCAGCATGATCTGTGGCTGGGACAAGAAGGGTCCTGGACTCTACTATGTGGA
TGAGAATGGGACTCGACTCTCGGGAAATATGTTCTCCACCGGTAGTGGGAACTCCCATGCCTATGGGGTCATGGATAGTG
GCTATCGACCTGACCTTAGTATTGAAGAGGCCTATGACCTGGGCCGAAGGGCAATTGTTCATGCCACCCACCGAGACAGC
TATTCTGGAGGCGTTGTCAATATGTACCACATGAAGGAGGACGGCTGGGTGAAAGTGGAAAGTACAGACGTCAGTGACCT
GATGCACCAGTACCGGGAGGCCAGTCAGTGA

Library Parental gene expression (RPM)
SRP017611_brain 1 .10 RPM
SRP017611_kidney 16 .00 RPM
SRP017611_liver 4 .68 RPM
ERP005899_muscle 313 .99 RPM
ERP005899_liver 9 .16 RPM
SRP030211_testis 16 .54 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000002026 ortholog_one2one 1 retrogene
retro_amel_27,
Canis familiaris ENSCAFG00000000829 ortholog_one2one 1 retrogene
retro_cfam_75,
Equus caballus ENSECAG00000018887 ortholog_one2one 1 retrogene
retro_ecab_18,
Felis catus ENSFCAG00000023131 ortholog_one2one 1 retrogene
retro_fcat_30,
Loxodonta africana ENSLAFG00000003213 ortholog_one2one 1 retrogene
retro_lafr_65,
Microcebus murinus ENSMICG00000015254 ortholog_one2one 1 retrogene
retro_mmur_33,
Myotis lucifugus ENSMLUG00000013876 ortholog_one2one 1 retrogene
retro_mluc_285,
Monodelphis domestica ENSMODG00000014366 ortholog_one2one 1 retrogene
retro_mdom_179,
Otolemur garnettii ENSOGAG00000013830 ortholog_one2one 1 retrogene
retro_ogar_256,
Procavia capensis ENSPCAG00000016741 ortholog_one2one 1 retrogene
retro_pcap_21,
Pan troglodytes ENSPTRG00000018022 ortholog_one2one 2 retrogenes
retro_ptro_1102, retro_ptro_97,
Pteropus vampyrus ENSPVAG00000002800 ortholog_one2one 1 retrogene
retro_pvam_20,
Sus scrofa ENSSSCG00000026951 ortholog_one2many 1 retrogene
retro_sscr_90,
Tupaia belangeri ENSTBEG00000007794 ortholog_one2one 1 retrogene
retro_tbel_2055,
Tarsius syrichta ENSTSYG00000007730 ortholog_one2one 1 retrogene
retro_tsyr_1639,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_btau_11 54.36 70.65
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Download FASTA sequences of all ENSBTAG00000003039 retrocopies