Parental gene: | PTCD2, ENSPTRG00000016968 |
| Aliases: | None |
| Description: | Pan troglodytes pentatricopeptide repeat domain 2 (PTCD2), mRNA. [Source:RefSeq mRNA;Acc:NM_001246655] |
| Organism: | Chimpanzee (Pan troglodytes) |
| Coordinates: | 5:43246435..43287436(-) |
>ENSPTRG00000016968
ATGGTCCGAGACAGTATGGCTGCTGCATTTCGGCCCTCGAATCGAGTTCTCCTGCAGGCGCTGCAGATTTTGGTGTATCC
TGGGGTGGGAGGCTCCGGCTCTGTCAGCTGCCGCTGCCCTCTCGGAGCTAAAAGATACCTACTTACAGATAATGTGGTGA
AATTAAAAGAATTTCAACAAAAGAAAGTGGCTGTTGCATGTAATCTTTCTGGCACTAAAGAAACGTATTTTAGAAACTTG
AAAAAGAAACTGACCCAGAACAAGCTCATCTTGAAGGGGGAGTTGATAACCTTACTACATTTGTGTGAGTCCCGGGACCA
TGTGGAACTGGCTAAAAATGTCATTTACAGGTACCATGCAGAGAACAAAAATTTCACTTTGGGGGAGTATAAATTTGGAC
CGCTTTTTGTGAGGTTGTGTTACGAGTTGGATCTCGAGGAATCTGCAGTGGAGCTCATGAAAGACCAGCATTTACGAGGT
TTCTTCTCAGACTCCACATCATTCAATATTTTGATGGATATGTTATTTATCAAAGGCAAATATAAAAGTGCTTTGCAAGT
ATTGATAGAGATGAAAAACCAAGATGTGAAGTTCACCAAAGATACCTATGTTCTTGCTTTTGCAATTTGCTACAAACTGA
ATAGCCCTGAGTCTTTCAAAATCTGTACTACATTAAGAGAAGAAGCTCTACTCAAAGGGGAAATTCTCTCCAGGAGAGCA
TCCTGTTTCGCTGTGGCATTAGCTCTGAATCAGAATGAGATGGCAAAAGCTATGTCCATTTTTTCTCAAATCATGAATCC
AGAAAGCATAGCCTGCATTAATTTAAATATTATAATCCACATCCAGTCAAATATGTTGGAAAACCTGATAAAGACTCTAA
AAAATGCTGCAGAAGGAAATTTATCAAAATTTGTGAGAAGACATGTGTTCTCGGAGGAAGTGCTGGCCAAAGTGAGGGAA
AAAGTGAAGGATGTGCCTGCCCTTGTGGCCAAATTTGATGAGATCTATGGGACACTGCACATCACTGGCCAGGTCACCAC
TGATTCTTTGGATGCTGTGCTCTGCCACACCCCCAGGGACAGGAAATCTCACACGTTGCTATTAAACAAGAGGATGGTCA
GCCGTCGCACCTTCCAGCCACTCAGCCAGTCCCTGTTGGCTGAGTAA
ATGGTCCGAGACAGTATGGCTGCTGCATTTCGGCCCTCGAATCGAGTTCTCCTGCAGGCGCTGCAGATTTTGGTGTATCC
TGGGGTGGGAGGCTCCGGCTCTGTCAGCTGCCGCTGCCCTCTCGGAGCTAAAAGATACCTACTTACAGATAATGTGGTGA
AATTAAAAGAATTTCAACAAAAGAAAGTGGCTGTTGCATGTAATCTTTCTGGCACTAAAGAAACGTATTTTAGAAACTTG
AAAAAGAAACTGACCCAGAACAAGCTCATCTTGAAGGGGGAGTTGATAACCTTACTACATTTGTGTGAGTCCCGGGACCA
TGTGGAACTGGCTAAAAATGTCATTTACAGGTACCATGCAGAGAACAAAAATTTCACTTTGGGGGAGTATAAATTTGGAC
CGCTTTTTGTGAGGTTGTGTTACGAGTTGGATCTCGAGGAATCTGCAGTGGAGCTCATGAAAGACCAGCATTTACGAGGT
TTCTTCTCAGACTCCACATCATTCAATATTTTGATGGATATGTTATTTATCAAAGGCAAATATAAAAGTGCTTTGCAAGT
ATTGATAGAGATGAAAAACCAAGATGTGAAGTTCACCAAAGATACCTATGTTCTTGCTTTTGCAATTTGCTACAAACTGA
ATAGCCCTGAGTCTTTCAAAATCTGTACTACATTAAGAGAAGAAGCTCTACTCAAAGGGGAAATTCTCTCCAGGAGAGCA
TCCTGTTTCGCTGTGGCATTAGCTCTGAATCAGAATGAGATGGCAAAAGCTATGTCCATTTTTTCTCAAATCATGAATCC
AGAAAGCATAGCCTGCATTAATTTAAATATTATAATCCACATCCAGTCAAATATGTTGGAAAACCTGATAAAGACTCTAA
AAAATGCTGCAGAAGGAAATTTATCAAAATTTGTGAGAAGACATGTGTTCTCGGAGGAAGTGCTGGCCAAAGTGAGGGAA
AAAGTGAAGGATGTGCCTGCCCTTGTGGCCAAATTTGATGAGATCTATGGGACACTGCACATCACTGGCCAGGTCACCAC
TGATTCTTTGGATGCTGTGCTCTGCCACACCCCCAGGGACAGGAAATCTCACACGTTGCTATTAAACAAGAGGATGGTCA
GCCGTCGCACCTTCCAGCCACTCAGCCAGTCCCTGTTGGCTGAGTAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 8 .47 RPM |
| SRP007412_cerebellum | 8 .60 RPM |
| SRP007412_heart | 8 .51 RPM |
| SRP007412_kidney | 9 .96 RPM |
| SRP007412_liver | 4 .39 RPM |
| SRP007412_testis | 6 .01 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Callithrix jacchus | ENSCJAG00000016364 | ortholog_one2one | 1 retrogene | |
| Homo sapiens | ENSG00000049883 | ortholog_one2one | 2 retrogenes | |
| Gorilla gorilla | ENSGGOG00000010695 | ortholog_one2one | 2 retrogenes | |
| Macaca mulatta | ENSMMUG00000017908 | ortholog_one2one | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000004516 | ortholog_one2one | 2 retrogenes | |
| Otolemur garnettii | ENSOGAG00000008390 | ortholog_one2one | 1 retrogene | |
| Ictidomys tridecemlineatus | ENSSTOG00000006596 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_ptro_447 | 71.31 | 62.63 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_ptro_952 | 79.25 | 61.08 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSPTRG00000016968 retrocopies