Parental gene:

PTCD2, ENSCJAG00000016364

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:2:136192053..136237810(-)


>ENSCJAG00000016364
ATGGTCCGTGACAGTATGGCTGCGGCACTTCGTCCTGGCAGTGGAGTTCTCCTGCAGGCCCTGCAGATTTCGGTGTATCC
TGGGGTGGGAGGCTCCGGCTCTGCCTGCTGCCGCTGCCCTCTCGGAGCTAAAAGATACCTACTTACAGATAACATTGTGA
AACTAAAAGAATTTCAGCATAAGAAAGTGGCCATTGCATGTAATCTTCCTGGCACGAAAGAAACCTATTTTAGAAACTTG
GAAGAGAAACTGAGCCAGAACAAGCTCATCTTGAAGGAGGAATTGATAACCTTACTTCATTTGTGTGAGTCCCGGGACCA
TGTGGAGCTGGCTAAAAATGTCATTTACAGGTACCATGCAGAGAACAGAAATATCACTCGTGGGGAGTATAAGTTCGGAC
CACTTTTCATGAGGCTGTGTTACGAGTTGGATCTTGAGGAATCCGCAGTGGAGCTCATGAAAGACCAGCATTTGCATGGT
TTCTTCTCAGACTCCACATCATTCAACATTTTGATGGATATGTTATTTATCAAAGGCAAATATAAAAGTGCTTTGGAAGT
CTTGATAGAGATGAAAAACCAAGATGTGAAGTTCACTGTAGATACCTATGTTCTTGCTTTTGCAATTTGCTATAAACTGA
ATAGCCCTGAGTCTTTTAAAATCTGTTCTACATTAAGAGAAGAAGCCCTACTCAAAGGAGAAATTCTCCCCAGGAGAGCA
TCCTGTTTCGCCGTGGCATTAGCTCTGAATCAGAATGAGGTGGCACAAGCTATGTCCATTTTTTCTCAAATCATGAATCC
AGAAAGCATAACCTGCACTAATTTAAATATTATACTCCATATCCAGTTAAATATGTTGGAAAACGTGATAGAGATACTAA
AAAATGCTACAGAAGGAAATTTATCAAAATATGTGAAGAGACAGGTGTTCTCAGAGGAAGTGCTGGCCAAAGTGAGGGAA
AAAGTGAAGGATGTGCCTGCCCTTGTGGCCAAATTTGATGAGCTGTATGGGAAACTGCACGTTAGTGGCCAAGTCACCAC
TTATTCTTTGGATGCTGTGCTCTGCCACATCCCTGGGGGCAGGAAATCCCACATGTTTCTATTAAACAAGAGAATGGTCA
GCCGTCGCACCTTCCAGCCACTCGGCCAGTCCCTGTTTGCTGAGTAA

Library Parental gene expression (RPM)
SRP051959_spleen 7 .06 RPM
SRP051959_skeletal_muscle 7 .73 RPM
SRP051959_lymph_node 5 .46 RPM
SRP051959_lung 4 .93 RPM
SRP051959_liver 6 .13 RPM
SRP051959_kidney 10 .76 RPM
SRP051959_heart 9 .51 RPM
SRP051959_colon 6 .48 RPM



Species Parental gene accession Homology type Retrogenes number
Homo sapiens ENSG00000049883 ortholog_one2one 2 retrogenes
retro_hsap_1388, retro_hsap_607,
Gorilla gorilla ENSGGOG00000010695 ortholog_one2one 2 retrogenes
retro_ggor_1077, retro_ggor_534,
Macaca mulatta ENSMMUG00000017908 ortholog_one2one 1 retrogene
retro_mmul_2240,
Nomascus leucogenys ENSNLEG00000004516 ortholog_one2one 2 retrogenes
retro_nleu_2954, retro_nleu_436,
Otolemur garnettii ENSOGAG00000008390 ortholog_one2one 1 retrogene
retro_ogar_3169,
Pan troglodytes ENSPTRG00000016968 ortholog_one2one 2 retrogenes
retro_ptro_447, retro_ptro_952,
Ictidomys tridecemlineatus ENSSTOG00000006596 ortholog_one2one 1 retrogene
retro_itri_1469,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_1598 98.06 73.84
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Download FASTA sequences of all ENSCJAG00000016364 retrocopies