Parental gene:

PCNP, ENSPTRG00000015172

Aliases:None
Description:None
Organism:Chimpanzee (Pan troglodytes)
Coordinates:3:104767049..104787221(+)


>ENSPTRG00000015172
ATGGCGGACGGGAAGGCGGGAGAGGAGAAGCCTGAAAAGTCGCAGCGAGCTGGAGCCGCCGGAGGACCTGAAGAAGAAGC
AGAAAAACCTGTGAAAACTAAGACTGTTTCTTCCAGTAATGGAGGGGAAAGTTCCAGTCGCAGCGCTGAGAAGCGATCAG
CTGAAGAAGAAGCTGCCGACCTCCCAACAAAGCCTACAAAGATCTCCAAGTTTGGATTTGCCATAGGTAGTCAGACGACA
AAGAAAGCATCAGCCATATCCATCAAACTTGGATCAAGTAAGCCTAAAGAAACTGTTCCAACTCTTGCTCCAAAAACTCT
TTCAGTAGCAGCAGCTTTTAATGAAGATGAAGATAGTGAACCAGAGGAAATGCCTCCAGAAGCAAAGATGAGGATGAAGA
ATATTGGAAGGGATACACCAACATCAGCTGGACCAAACTCCTTCAATAAAGGAAAGCATGGGTTTTCTGATAACCAGAAG
CTGTGGGAGCGAAATATAAAATCTCATCTTGGAAATGTCCATGACCAAGACAATTAA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 59 .58 RPM
SRP007412_cerebellum 101 .02 RPM
SRP007412_heart 48 .38 RPM
SRP007412_kidney 53 .95 RPM
SRP007412_liver 30 .15 RPM
SRP007412_testis 36 .46 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000007972 ortholog_one2one 11 retrogenes
retro_chof_1170, retro_chof_1215, retro_chof_2070, retro_chof_2280, retro_chof_2290, retro_chof_2553, retro_chof_2575, retro_chof_594, retro_chof_651, retro_chof_806, retro_chof_819,
Callithrix jacchus ENSCJAG00000000508 possible_ortholog 6 retrogenes
retro_cjac_101, retro_cjac_1569, retro_cjac_1722, retro_cjac_3205, retro_cjac_3332, retro_cjac_401,
Dasypus novemcinctus ENSDNOG00000008873 ortholog_one2one 5 retrogenes
retro_dnov_1606, retro_dnov_259, retro_dnov_370, retro_dnov_910, retro_dnov_98,
Homo sapiens ENSG00000081154 ortholog_one2one 3 retrogenes
retro_hsap_1130, retro_hsap_1155, retro_hsap_1264,
Gorilla gorilla ENSGGOG00000025423 ortholog_one2one 4 retrogenes
retro_ggor_882, retro_ggor_901, retro_ggor_902, retro_ggor_994,
Loxodonta africana ENSLAFG00000005518 ortholog_one2one 2 retrogenes
retro_lafr_1189, retro_lafr_458,
Microcebus murinus ENSMICG00000008072 ortholog_one2one 10 retrogenes
retro_mmur_1010, retro_mmur_1138, retro_mmur_1286, retro_mmur_148, retro_mmur_1535, retro_mmur_1547, retro_mmur_1625, retro_mmur_167, retro_mmur_458, retro_mmur_887,
Macaca mulatta ENSMMUG00000017782 ortholog_one2one 3 retrogenes
retro_mmul_1312, retro_mmul_1377, retro_mmul_2598,
Mustela putorius furo ENSMPUG00000011696 possible_ortholog 1 retrogene
retro_mputfur_850,
Mus musculus ENSMUSG00000071533 ortholog_one2one 4 retrogenes
retro_mmus_2331, retro_mmus_2339, retro_mmus_2822, retro_mmus_3034,
Nomascus leucogenys ENSNLEG00000003224 ortholog_one2one 2 retrogenes
retro_nleu_2100, retro_nleu_2971,
Oryctolagus cuniculus ENSOCUG00000011110 ortholog_one2one 7 retrogenes
retro_ocun_1072, retro_ocun_1144, retro_ocun_1496, retro_ocun_1537, retro_ocun_573, retro_ocun_687, retro_ocun_868,
Procavia capensis ENSPCAG00000007007 ortholog_one2one 3 retrogenes
retro_pcap_161, retro_pcap_194, retro_pcap_273,
Pongo abelii ENSPPYG00000013591 ortholog_one2one 5 retrogenes
retro_pabe_1051, retro_pabe_1598, retro_pabe_3778, retro_pabe_935, retro_pabe_961,
Rattus norvegicus ENSRNOG00000028411 ortholog_one2one 1 retrogene
retro_rnor_2138,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ptro_676 81.82 66.29
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2. retro_ptro_790 73.79 57.30
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3. retro_ptro_864 91.49 78.65
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Download FASTA sequences of all ENSPTRG00000015172 retrocopies