Parental gene:

TRNT1, ENSPTRG00000014564

Aliases:None
Description:None
Organism:Chimpanzee (Pan troglodytes)
Coordinates:3:3199136..3220240(+)


>ENSPTRG00000014564
ATGCTGAGGTGCCTGTATCATTGGCACAGGCCAGTGCTGAACCGTAGGTGGAGTAGGCTGTGCCTTCTGAAGCAGTATCT
ATTTACAATGAAGTTGCAGTCTCCCGAATTCCAGTCACTTTTCACAGAAGGATTGAAGAGTCTGACAGAATTATTTGTCA
AAGAGAATCACGAATTAAGAATAGCAGGAGGAGCAGTGAGGGATTTATTAAATGGAGTAAAGCCTCAGGATATAGATTTT
GCCAGCACTGCTACCCCTACTCAAATGAAGGAGATGTTTCAGTCGGCTGGGATTCGGATGATAAACAACAGAGGAGAAAA
GCACGGAACAATTACTGCCAGGCTTCATGAAGAAAATTTTGAGATTACTACACTACGGATTGATGTCACCACTGATGGAA
GACATGCTGAGGTAGAATTTACAACTGACTGGCAGAAAGATGCGGAACGCAGAGATCTCACTATAAATTCTATGTTTTTA
GGTTTTGATGGCACTTTATTTGACTACTTTAATGGTTATGAAGATTTAAAAAATAAGAAAGTTAGATTTGTTGGACATGC
TAAACAGAGAATACAAGAGGATTATCTTAGAATTTTAAGATACTTCAGGTTTTATGGGAGAATTGTAGACAAACCTGGTG
ACCATGATCCTGAGACTTTGGAAGCAATTGCAGAAAATGCAAAAGGCTTGGCTGGAATATCAGGAGAAAGGATTTGGGTG
GAACTGAAAAAAATTCTTGTTGGTAACCATGTAAATCATTTGATTCACCTTATCTATGATCTTGATGTGGCTCCTTATAT
AGGTTTACCTGCTAATGCAAGTTTAGAAGAATTTGACAAAGTCAGTAAAAATGTTGATGGTTTTTCACCAAAGCCAATGA
CTCTTTTGGCCTCATTATTCAAAGTGCAAGATGATGTCACAAAATTGGATTTGAGGTTGAAGATCGCAAAAGAGGAGAAA
AACCTTGGCTTATTTATAGTTAAAAATAGGAAAGATTTAATTAAAGCAACAGATAGTTCAGACCCATTGAAACCCTATCA
AGACTTCATTATAGATTCTAGGGAACCTGATGCAACTACTCGTGTATGTGAACTACTGAAGTACCAAGGAGAGCACTGTC
TCCTAAAGGAAATGCAGCAGTGGTCCATTCCTCCATTTCCTGTAAGTGGCCATGACATCAGAAAAGTGGGCATTTCTTCA
GGAAAAGAAATTGGGGCTCTATTACAACAGTTGCGAGAACAGTGGAAAAAAAGTGGTTACCAAATGGAAAAAGATGAACT
TCTGAGTTACATAAAGAAGACCTAA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 10 .12 RPM
SRP007412_cerebellum 7 .85 RPM
SRP007412_heart 5 .57 RPM
SRP007412_kidney 9 .70 RPM
SRP007412_liver 6 .71 RPM
SRP007412_testis 25 .19 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000015466 ortholog_one2one 1 retrogene
retro_cjac_1512,
Dasypus novemcinctus ENSDNOG00000008837 ortholog_one2one 1 retrogene
retro_dnov_1635,
Echinops telfairi ENSETEG00000018177 ortholog_one2one 2 retrogenes
retro_etel_1871, retro_etel_905,
Homo sapiens ENSG00000072756 ortholog_one2one 2 retrogenes
retro_hsap_246, retro_hsap_2598,
Gorilla gorilla ENSGGOG00000015286 ortholog_one2one 1 retrogene
retro_ggor_300,
Nomascus leucogenys ENSNLEG00000003226 ortholog_one2one 1 retrogene
retro_nleu_856,
Petromyzon marinus ENSPMAG00000002236 ortholog_one2one 1 retrogene
retro_pmar_17,
Pongo abelii ENSPPYG00000013702 ortholog_one2one 3 retrogenes
retro_pabe_1916, retro_pabe_2721, retro_pabe_412,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ptro_1522 68.95 55.99
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Download FASTA sequences of all ENSPTRG00000014564 retrocopies