Parental gene:

IDH1, ENSPTRG00000012865

Aliases:None
Description:Isocitrate dehydrogenase [NADP] [Source:UniProtKB/TrEMBL;Acc:H2QJB5]
Organism:Chimpanzee (Pan troglodytes)
Coordinates:2B:213112188..213131789(-)


>ENSPTRG00000012865
ATGTCCAAAAAAATCAGTGGTGGTTCTGTGGTAGAGATGCAAGGAGATGAAATGACACGAATCATTTGGGAATTGATTAA
AGAGAAACTCATTTTTCCCTACGTGGAATTGGATTTACATAGCTATGATTTAGGCATAGAGAATCGTGACGCCACCAACG
ACCAAGTCACCAAGGATGCTGCAGAAGCTATAAAGAAGTATAATGTTGGCGTCAAATGTGCCACTATCACTCCTGATGAG
AAAAGGGTTGAGGAGTTCAAGTTGAAACAAATGTGGAAATCACCAAATGGCACCATACGAAATATTCTGGGTGGCACGGT
CTTCAGAGAAGCCATTATCTGCAAAAATATCCCCCGGCTTGTGAGTGGATGGGTAAAACCTATCATCATAGGTCGTCATG
CTTATGGGGATCAATACAGAGCAACTGATTTTGTTGTTCCTGGGCCTGGAAAAGTAGAGATAACCTACACACCAAGTGAC
GGAACCCAAAAGGTGACATACCTGGTACATAACTTTGAAGAGGGTGGTGGTGTTGCCATGGGGATGTATAATCAAGATAA
GTCAATTGAAGATTTTGCACACAGTTCCTTCCAAATGGCTCTGTCTAAGGGTTGGCCTTTGTATCTGAGCACCAAAAACA
CTATTCTGAAGAAATATGATGGGCGTTTTAAAGACATCTTTCAGGAGATATATGACAAGCGGTACAAGTCCCAGTTTGAA
GCCCAAAAGATCTGGTATGAGCACAGGCTCATCGACGACATGGTGGCCCAAGCTATGAAATCAGAGGGAGGCTTCATCTG
GGCCTGTAAAAACTATGATGGTGACGTGCAGTCGGACTCTGTGGCCCAAGGGTATGGCTCTCTCGGCATGATGACCAGTG
TGCTGGTTTGTCCAGATGGCAAGACAGTAGAAGCAGAGGCTGCCCACGGGACTGTAACCCGTCACTACCGCATGTACCAG
AAAGGACAGGAGACGTCCACCAATCCCATTGCTTCCATTTTTGCCTGGACCAGAGGGTTAGCCCACAGAGCAAAGCTTGA
TAACAATAAAGAGCTTGCCTTCTTTGCAAATGCTTTGGAAGAAGTCTCTATTGAGACAATTGAGGCTGGCTTCATGACCA
AGGACTTGGCTGCTTGCATTAAAGGTTTACCCAATGTGCAACGTTCTGACTACTTGAATACATTTGAGTTCATGGATAAA
CTTGGAGAAAACTTGAAGATCAAACTAGCTCAGGCCAAACTTTAA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 11 .96 RPM
SRP007412_cerebellum 13 .80 RPM
SRP007412_heart 15 .13 RPM
SRP007412_kidney 117 .34 RPM
SRP007412_liver 107 .73 RPM
SRP007412_testis 43 .00 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000020527 ortholog_one2one 1 retrogene
retro_btau_1235,
Choloepus hoffmanni ENSCHOG00000004574 ortholog_one2one 2 retrogenes
retro_chof_2158, retro_chof_897,
Cavia porcellus ENSCPOG00000013587 ortholog_one2one 1 retrogene
retro_cpor_1010,
Homo sapiens ENSG00000138413 ortholog_one2one 1 retrogene
retro_hsap_3554,
Gorilla gorilla ENSGGOG00000012619 ortholog_one2one 1 retrogene
retro_ggor_2400,
Microcebus murinus ENSMICG00000009797 ortholog_one2one 1 retrogene
retro_mmur_1364,
Macaca mulatta ENSMMUG00000016077 ortholog_one2one 1 retrogene
retro_mmul_1817,
Nomascus leucogenys ENSNLEG00000007143 ortholog_one2one 3 retrogenes
retro_nleu_1169, retro_nleu_2328, retro_nleu_3117,
Otolemur garnettii ENSOGAG00000014848 ortholog_one2one 4 retrogenes
retro_ogar_1488, retro_ogar_2270, retro_ogar_2925, retro_ogar_3057,
Pongo abelii ENSPPYG00000013125 ortholog_one2one 2 retrogenes
retro_pabe_2935, retro_pabe_926,
Sus scrofa ENSSSCG00000023264 ortholog_one2one 1 retrogene
retro_sscr_549,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ptro_2415 92.02 51.45
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Download FASTA sequences of all ENSPTRG00000012865 retrocopies