Parental gene: | MTHFD2, ENSPTRG00000012081 |
| Aliases: | None |
| Description: | None |
| Organism: | Chimpanzee (Pan troglodytes) |
| Coordinates: | 2A:75163018..75178378(+) |
>ENSPTRG00000012081
ATGGCTGCGACTTCTCTAATGTCTGCTTTGGCTGCCCGGCTGCTGCAGCCCGCGCACAGCTGCTCCCTTCGCCTTCGCCC
TTTCCACCTCGCGGCAGTTCGAAATGAAGCTGTTGTCATTTCTGGAAGGAAACTGGCCCAGCAGATCAAGCAGGAAGTGC
GGCAGGAGGTAGAAGAGTGGGTGGCCTCAGGCAACAAACGGCCACACCTGAGCGTGATCCTGGTTGGCGAGAATCCTGCA
AGTCACTCCTACGTCCTCAACAAAACCAGGGCAGCTGCAGCTGTGGGAATCAACAGTGAGACAATTATGAAACCAGCTTC
AATTTCAGAGGAAGAATTGTTGAATTTAATCAATAAACTGAATAATGATGATAATGTAGATGGCCTCCTTGTTCAGTTGC
CTCTTCCAGAGCATATTGATGAGAGAAGGATCTGCAATGCTGTTTCTCCAGACAAGGATGTTGATGGCTTTCATGTAATT
AATGTAGGACGAATGTGTTTGGATCAGTATTCCATGTTACCGGCTACCCCATGGGGTGTGTGGGAAATAATCAAGCGAAC
TGGCATTCCAACCCTAGGGAAGAATGTGGTTGTGGCTGGAAGGTCAAAAAATGTTGGAATGCCCATTGCAATGTTACTGC
ACACAGATGGGGCGCATGAACGTCCCGGAGGTGATGCCACTGTTACAATATCTCATCGATATACTCCCAAAGAGCAGTTG
AAGAAACATACGATTCTTGCAGATATTGTAATATCTGCTGCAGGTATTCCAAATCTGATCACAGCAGATATGATCAAGGA
AGGAGCAGCAGTCATTGATGTGGGAATAAATAGAGTTCACGATCCTGTAACTGCCAAACCCAAGTTGGTTGGAGATGTGG
ATTTTGAAGGAGTCAGACAAAAAGCTGGGTATATCACTCCAGTTCCTGGAGGTGTTGGCCCCATGACAGTGGCAATGCTA
ATGAAGAATACCATTATTGCTGCAAAAAAGGTGCTGAGGCTTGAAGAGCGAGAAGTGCTGAAGTCTAAAGAGCTTGGGGT
AGCCACTAATTAA
ATGGCTGCGACTTCTCTAATGTCTGCTTTGGCTGCCCGGCTGCTGCAGCCCGCGCACAGCTGCTCCCTTCGCCTTCGCCC
TTTCCACCTCGCGGCAGTTCGAAATGAAGCTGTTGTCATTTCTGGAAGGAAACTGGCCCAGCAGATCAAGCAGGAAGTGC
GGCAGGAGGTAGAAGAGTGGGTGGCCTCAGGCAACAAACGGCCACACCTGAGCGTGATCCTGGTTGGCGAGAATCCTGCA
AGTCACTCCTACGTCCTCAACAAAACCAGGGCAGCTGCAGCTGTGGGAATCAACAGTGAGACAATTATGAAACCAGCTTC
AATTTCAGAGGAAGAATTGTTGAATTTAATCAATAAACTGAATAATGATGATAATGTAGATGGCCTCCTTGTTCAGTTGC
CTCTTCCAGAGCATATTGATGAGAGAAGGATCTGCAATGCTGTTTCTCCAGACAAGGATGTTGATGGCTTTCATGTAATT
AATGTAGGACGAATGTGTTTGGATCAGTATTCCATGTTACCGGCTACCCCATGGGGTGTGTGGGAAATAATCAAGCGAAC
TGGCATTCCAACCCTAGGGAAGAATGTGGTTGTGGCTGGAAGGTCAAAAAATGTTGGAATGCCCATTGCAATGTTACTGC
ACACAGATGGGGCGCATGAACGTCCCGGAGGTGATGCCACTGTTACAATATCTCATCGATATACTCCCAAAGAGCAGTTG
AAGAAACATACGATTCTTGCAGATATTGTAATATCTGCTGCAGGTATTCCAAATCTGATCACAGCAGATATGATCAAGGA
AGGAGCAGCAGTCATTGATGTGGGAATAAATAGAGTTCACGATCCTGTAACTGCCAAACCCAAGTTGGTTGGAGATGTGG
ATTTTGAAGGAGTCAGACAAAAAGCTGGGTATATCACTCCAGTTCCTGGAGGTGTTGGCCCCATGACAGTGGCAATGCTA
ATGAAGAATACCATTATTGCTGCAAAAAAGGTGCTGAGGCTTGAAGAGCGAGAAGTGCTGAAGTCTAAAGAGCTTGGGGT
AGCCACTAATTAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 2 .57 RPM |
| SRP007412_cerebellum | 6 .13 RPM |
| SRP007412_heart | 13 .73 RPM |
| SRP007412_kidney | 11 .53 RPM |
| SRP007412_liver | 3 .04 RPM |
| SRP007412_testis | 24 .13 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000017345 | ortholog_one2many | 2 retrogenes | |
| Canis familiaris | ENSCAFG00000008716 | ortholog_one2many | 1 retrogene | |
| Callithrix jacchus | ENSCJAG00000017810 | possible_ortholog | 3 retrogenes | |
| Homo sapiens | ENSG00000065911 | ortholog_one2one | 5 retrogenes | |
| Macropus eugenii | ENSMEUG00000013987 | ortholog_one2one | 4 retrogenes | |
| Mustela putorius furo | ENSMPUG00000007829 | ortholog_one2one | 3 retrogenes | |
| Nomascus leucogenys | ENSNLEG00000000326 | ortholog_one2one | 5 retrogenes | |
| Otolemur garnettii | ENSOGAG00000009089 | ortholog_one2one | 1 retrogene | |
| Pteropus vampyrus | ENSPVAG00000013948 | ortholog_one2one | 2 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_ptro_1846 | 90.80 | 92.86 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_ptro_1910 | 78.68 | 72.86 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_ptro_2162 | 79.75 | 90.29 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_ptro_2641 | 83.82 | 76.57 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSPTRG00000012081 retrocopies