RetrogeneDB ID:

retro_ogar_3390

Retrocopy
location
Organism:Bushbaby (Otolemur garnettii)
Coordinates:GL873815.1:684499..685549(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:MTHFD2
Ensembl ID:ENSOGAG00000009089
Aliases:None
Description:methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase [Source:HGNC Symbol;Acc:7434]


Retrocopy-Parental alignment summary:






>retro_ogar_3390
GTGGCTGCAAGTTCCTTCATATCCGTGTTGGCCACTCAGCTGTTCCGGCCCGCACAGAGCTGTTCTCTCCGCCATCATCC
CTTCCTTTTTGCGGCGGTTTGACATGAAGCTGTGGTCATATCTGGAAGGAAACTGGCCCAGCAGATCAAGCAGGAAGTGC
AGCAGAAGGTGGAAGAGTGGGTGGCCTTTGGCAACAAACTACCCTACCTGAGCATGATTCTGGTGGGAGAGAATCCTGCA
AGTCACTCCTATGTCCTCAACAAAACCAGAGCAGCTGCAGCCGTGGGAATCAACAGTGAGACAATTGTGAAACCAGCAAC
AATTTCAGAGGAAGAATTATTGAATTTAATTAATAAGCTGAATAATGATGATAATGTAGATGGCCTCCTTGTTCAGCTGC
CTCTCCCAGAGCACATTGATGAGAGAAAGATCTGTAATACTGTTTCTCCAGACAAGGATGTTGATGGCTTTCATGTGATC
AAAGTAGGTTGAATGTGTTTGGACAAGTATTCCATATTACCGGCTACCCCATGGGGTGTGTGGGAAATAATTAAGTGAAC
TGGTATTCCAACCCTAGGGAAGAATGTGGTTGTGGCTGGAAGGTCAAAAATGTTGGGATGCCTATTGCAATGTTACTGCA
CACAGATGAGGCACATGAAAGTCCTGGAGGTGATGCCACTGTTACGATATGCCACTGATACACTCCCAAAGAGCAGTTGA
AGAAATATACACTTCTTGCAGATATTGTAGTATCTGCTGCAGGCGTTCCAAATCTGATCACAGTAGATATGATCAAGGAA
GGAGCAACAGTCATAGATGGGGGAATAAATAGAGTTCAAGATCCCATAACTACTAAATCCAAGTTGGTTGGAGATGTGAA
TTTTGAAGGAGTAAAGAAAAAAAGCTGGTTATATCACTCCAGTTCCTGAGGGTGTTGGTTCCATGACAGTGGCGATGCTA
ATGAAGAATACCATTATTGCTGCAAAAAAATTTCTGAGACCTGAAGAGCGGGAAGTGCTGAAGTCTAAAGAGCTTGGAGT
AGCCACTAAT

ORF - retro_ogar_3390 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 90.62 %
Parental protein coverage: 100. %
Number of stop codons detected: 4
Number of frameshifts detected 2


Retrocopy - Parental Gene Alignment:

ParentalMAASSFISVLATRLFRPARSCPLRHRPFHLAAVRHEAVVISGRKLAQQIKQEVQQEVEEWVASGNKRPYL
.AASSFISVLAT.LFRPA.SC.LRH.PF..AAV.HEAVVISGRKLAQQIKQEVQQ.VEEWVA.GNK.PYL
RetrocopyVAASSFISVLATQLFRPAQSCSLRHHPFLFAAV*HEAVVISGRKLAQQIKQEVQQKVEEWVAFGNKLPYL
ParentalSVILVGENPASHSYVLNKTRAAAAVGINSETIVKPATISEEELLNLINKLNNDDNVDGLLVQLPLPEHID
S.ILVGENPASHSYVLNKTRAAAAVGINSETIVKPATISEEELLNLINKLNNDDNVDGLLVQLPLPEHID
RetrocopySMILVGENPASHSYVLNKTRAAAAVGINSETIVKPATISEEELLNLINKLNNDDNVDGLLVQLPLPEHID
ParentalERKICNAVSPDKDVDGFHVINVGRMCLDQYSMLPATPWGVWEIIKRTGIPTLGKNVVVAGRS-KNVGMPI
ERKICN.VSPDKDVDGFHVI.VG.MCLD.YS.LPATPWGVWEIIK.TGIPTLGKNVVVAGRS.KNVGMPI
RetrocopyERKICNTVSPDKDVDGFHVIKVG*MCLDKYSILPATPWGVWEIIK*TGIPTLGKNVVVAGRS<KNVGMPI