Parental gene:

NFU1, ENSPTRG00000012016

Aliases:None
Description:None
Organism:Chimpanzee (Pan troglodytes)
Coordinates:2A:70314652..70357321(-)


>ENSPTRG00000012016
ATGGCGGCGACGGCCAGGCGGGGCTGGGGAGCTGCGGCTGTTGCCGCCGGGCTGCGCAGGCGGTTCTGTCATATGTTGAA
GAATCCATACACCATTAAGAAACAGCCTCTGCATCAGTTTGTACAAAGACCACTTTTCCCACTACCTGCAGCCTTTTATA
ACCCAGTGAGATACATGTTTATTCAAACACAAGATACCCCAAATCCAAACAGCTTAAAGTTTATACCAGGAAAACCAGTT
CTTGAGACAAGGACCATGGATTTTCCCACCCCAGCTGCAGCATTTCGCTCCCCTCTGGCTAGGCAGTTATTTAGGATTGA
AGGAGTAAAAAGTGTCTTCTTTGGACCAGATTTCATCACTGTCACAAAGGAAAATGAAGAATTAGACTGGAATTTACTGA
AACCAGATATTTATGCAACAATCATGGACTTCTTTGCATCTGGCTTACCCCTGGTTACTGAGGAAACACCTTCAGGAGAA
GCAGGATCTGAAGAAGATGATGAAGTTGTGGCAATGATTAAGGAATTGTTAGATACTAGAATACGGCCAACTGTGCAGGA
AGATGGAGGGGATGTAATCTACAAAGGCTTTGAAGATGGCATTGTACAGCTGAAACTCCAGGGTTCTTGTACCAGCTGCC
CTAGTTCAATCATTACTCTGAAAAATGGAATTCAGAACATGCTGCAGTTTTATATTCCGGAGGTAGAAGGCGTAGAACAG
GTTATGGATGATGAATCAGATGAAAAAGAAGCAAACTCACCTTAA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 17 .41 RPM
SRP007412_cerebellum 16 .78 RPM
SRP007412_heart 41 .97 RPM
SRP007412_kidney 30 .86 RPM
SRP007412_liver 13 .03 RPM
SRP007412_testis 36 .25 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000005978 ortholog_one2one 1 retrogene
retro_chof_456,
Callithrix jacchus ENSCJAG00000019156 ortholog_one2one 1 retrogene
retro_cjac_1573,
Echinops telfairi ENSETEG00000019002 ortholog_one2one 1 retrogene
retro_etel_1371,
Homo sapiens ENSG00000169599 ortholog_one2one 1 retrogene
retro_hsap_2638,
Macaca mulatta ENSMMUG00000000435 ortholog_one2one 1 retrogene
retro_mmul_1524,
Monodelphis domestica ENSMODG00000011805 ortholog_one2one 1 retrogene
retro_mdom_1395,
Mustela putorius furo ENSMPUG00000006663 ortholog_one2many 1 retrogene
retro_mputfur_67,
Mus musculus ENSMUSG00000029993 ortholog_one2one 1 retrogene
retro_mmus_1401,
Nomascus leucogenys ENSNLEG00000010101 ortholog_one2one 1 retrogene
retro_nleu_646,
Ochotona princeps ENSOPRG00000016760 ortholog_one2one 2 retrogenes
retro_opri_380, retro_opri_48,
Pongo abelii ENSPPYG00000012339 ortholog_one2one 1 retrogene
retro_pabe_2329,
Tupaia belangeri ENSTBEG00000008616 ortholog_one2one 1 retrogene
retro_tbel_525,
Tarsius syrichta ENSTSYG00000013765 ortholog_one2one 1 retrogene
retro_tsyr_108,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ptro_1778 89.14 86.61
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Download FASTA sequences of all ENSPTRG00000012016 retrocopies