Parental gene:

ENSPTRG00000008742

Aliases:None
Description:None
Organism:Chimpanzee (Pan troglodytes)
Coordinates:17:47745645..47751773(+)


>ENSPTRG00000008742
ATGAAGTTTAATCCCTTTGTGACTTCCGACCGAAGCAAGAATCGCAAAAGGCATTTCAATGCACCTTCCCACATTCGAAG
GAAGATTATGTCTTCCCCTCTTTCCAAAGAGCTGAGACAGAAGTACAACGTGCGATCCATGCCCATCCGAAAGGATGATG
AAGTTCAGGTGGTACGTGGACACTATAAAGGTCAGCAAATTGGCAAAGTAGTCCAGGTTTACAGGAAGAAATATGTTATC
TACATTGAACGGGTGCAGCGGGAAAAGGCTAATGGCACAACTGTCCACGTAGGCATTCACCCCAGCAAGGTGGTTATCAC
TAGGCTAAAACTGGACAAAGACCGCAAAAAGATCCTTGAACGGAAAGCCAAATCTCGCCAAGTAGGAAAGGAAAAGGGCA
AATACAAGGAAGAAACCATTGAGAAGATGCAGGAATAA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 147 .43 RPM
SRP007412_cerebellum 66 .10 RPM
SRP007412_heart 45 .91 RPM
SRP007412_kidney 142 .42 RPM
SRP007412_liver 66 .42 RPM
SRP007412_testis 30 .56 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000012344 possible_ortholog 2 retrogenes
retro_btau_1090, retro_btau_230,
Callithrix jacchus ENSCJAG00000014372 possible_ortholog 8 retrogenes
retro_cjac_110, retro_cjac_119, retro_cjac_240, retro_cjac_250, retro_cjac_270, retro_cjac_297, retro_cjac_321, retro_cjac_362,
Cavia porcellus ENSCPOG00000001315 possible_ortholog 10 retrogenes
retro_cpor_1009, retro_cpor_1161, retro_cpor_1346, retro_cpor_1421, retro_cpor_1503, retro_cpor_1526, retro_cpor_167, retro_cpor_522, retro_cpor_585, retro_cpor_858,
Equus caballus ENSECAG00000015757 possible_ortholog 4 retrogenes
retro_ecab_429, retro_ecab_473, retro_ecab_515, retro_ecab_609,
Felis catus ENSFCAG00000011259 possible_ortholog 13 retrogenes
retro_fcat_1090, retro_fcat_1151, retro_fcat_1198, retro_fcat_1236, retro_fcat_1257, retro_fcat_1309, retro_fcat_1412, retro_fcat_1652, retro_fcat_1801, retro_fcat_1845, retro_fcat_1965, retro_fcat_497, retro_fcat_801,
Homo sapiens ENSG00000161970 possible_ortholog 27 retrogenes
retro_hsap_1137, retro_hsap_1309, retro_hsap_1376, retro_hsap_1394, retro_hsap_191, retro_hsap_2108, retro_hsap_2165, retro_hsap_2253, retro_hsap_253, retro_hsap_267, retro_hsap_2946, retro_hsap_3118, retro_hsap_3260, retro_hsap_3324, retro_hsap_3490, retro_hsap_3700, retro_hsap_3803, retro_hsap_3813, retro_hsap_3914, retro_hsap_4043, retro_hsap_4061, retro_hsap_4874, retro_hsap_4932, retro_hsap_642, retro_hsap_691, retro_hsap_915, retro_hsap_998,
Macropus eugenii ENSMEUG00000009891 possible_ortholog 7 retrogenes
retro_meug_1239, retro_meug_1538, retro_meug_1607, retro_meug_1827, retro_meug_262, retro_meug_322, retro_meug_534,
Myotis lucifugus ENSMLUG00000002176 possible_ortholog 1 retrogene
retro_mluc_232,
Monodelphis domestica ENSMODG00000006201 possible_ortholog 2 retrogenes
retro_mdom_36, retro_mdom_64,
Mustela putorius furo ENSMPUG00000007988 possible_ortholog 12 retrogenes
retro_mputfur_1003, retro_mputfur_1146, retro_mputfur_1385, retro_mputfur_1428, retro_mputfur_1595, retro_mputfur_251, retro_mputfur_365, retro_mputfur_395, retro_mputfur_488, retro_mputfur_522, retro_mputfur_643, retro_mputfur_685,
Mus musculus ENSMUSG00000060938 possible_ortholog 21 retrogenes
retro_mmus_1325, retro_mmus_1444, retro_mmus_1506, retro_mmus_1642, retro_mmus_1866, retro_mmus_1978, retro_mmus_2011, retro_mmus_2218, retro_mmus_2435, retro_mmus_2540, retro_mmus_2673, retro_mmus_3078, retro_mmus_3174, retro_mmus_320, retro_mmus_3270, retro_mmus_3291, retro_mmus_3361, retro_mmus_384, retro_mmus_556, retro_mmus_900, retro_mmus_939,
Nomascus leucogenys ENSNLEG00000009981 possible_ortholog 1 retrogene
retro_nleu_76,
Oryctolagus cuniculus ENSOCUG00000006538 possible_ortholog 11 retrogenes
retro_ocun_1125, retro_ocun_1290, retro_ocun_1442, retro_ocun_1484, retro_ocun_1515, retro_ocun_1621, retro_ocun_1917, retro_ocun_529, retro_ocun_542, retro_ocun_589, retro_ocun_803,
Otolemur garnettii ENSOGAG00000017070 possible_ortholog 3 retrogenes
retro_ogar_118, retro_ogar_255, retro_ogar_66,
Rattus norvegicus ENSRNOG00000004214 possible_ortholog 3 retrogenes
retro_rnor_213, retro_rnor_260, retro_rnor_273,
Sarcophilus harrisii ENSSHAG00000006890 possible_ortholog 1 retrogene
retro_shar_458,
Sus scrofa ENSSSCG00000028850 possible_ortholog 9 retrogenes
retro_sscr_261, retro_sscr_363, retro_sscr_426, retro_sscr_427, retro_sscr_471, retro_sscr_485, retro_sscr_508, retro_sscr_609, retro_sscr_736,
Ictidomys tridecemlineatus ENSSTOG00000021923 possible_ortholog 6 retrogenes
retro_itri_1113, retro_itri_1145, retro_itri_1206, retro_itri_1262, retro_itri_1670, retro_itri_811,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ptro_73 97.24 100.00
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2. retro_ptro_1546 83.56 100.00
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3. retro_ptro_2510 85.37 84.14
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Download FASTA sequences of all ENSPTRG00000008742 retrocopies