Parental gene: | COX5A, ENSPTRG00000007289 |
| Aliases: | None |
| Description: | Pan troglodytes mitochondrial cytochrome c oxidase subunit Va (COX5A), nuclear gene encoding mitochondrial protein, mRNA. [Source:RefSeq mRNA;Acc:NM_001118913] |
| Organism: | Chimpanzee (Pan troglodytes) |
| Coordinates: | 15:72488352..72507367(-) |
>ENSPTRG00000007289
ATGCTGGGCGCCGCTCTCCGCCGCTGCGCTGTGGCCGCAACCACCCGGGCCGGCCCTCGAGGCCTCCTGCACTCCGCCCG
GACCCCCGGCCCCGCCGCGGCTATCCAGTCAGTTCGCTGCTATTCCCATGGGTCACAGGAGACAGATGAGGAGTTTGATG
CTCGCTGGGTAACATACTTCAACAAGCCAGATATAGATGCCTGGGAATTGCGTAAAGGGATAAACACACTTGTTACCTAT
GATATGGTTCCAGAGCCCAAAATCATTGATGCTGCTTTGCGGGCATGCAGACGGTTAAATGATTTTGCTAGTACAGTTCG
TATCCTAGAGGCTGTTAAGGACAAAGCAGGACCTCATAAGGAAATCTACCCCTATGTCATCCAGGAACTTAGACCAACTT
TAAATGAACTGGGAATCTCCACTCCAGAGGAACTGGGCCTTGACAAAGTGTAA
ATGCTGGGCGCCGCTCTCCGCCGCTGCGCTGTGGCCGCAACCACCCGGGCCGGCCCTCGAGGCCTCCTGCACTCCGCCCG
GACCCCCGGCCCCGCCGCGGCTATCCAGTCAGTTCGCTGCTATTCCCATGGGTCACAGGAGACAGATGAGGAGTTTGATG
CTCGCTGGGTAACATACTTCAACAAGCCAGATATAGATGCCTGGGAATTGCGTAAAGGGATAAACACACTTGTTACCTAT
GATATGGTTCCAGAGCCCAAAATCATTGATGCTGCTTTGCGGGCATGCAGACGGTTAAATGATTTTGCTAGTACAGTTCG
TATCCTAGAGGCTGTTAAGGACAAAGCAGGACCTCATAAGGAAATCTACCCCTATGTCATCCAGGAACTTAGACCAACTT
TAAATGAACTGGGAATCTCCACTCCAGAGGAACTGGGCCTTGACAAAGTGTAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 82 .19 RPM |
| SRP007412_cerebellum | 32 .51 RPM |
| SRP007412_heart | 174 .38 RPM |
| SRP007412_kidney | 84 .94 RPM |
| SRP007412_liver | 41 .87 RPM |
| SRP007412_testis | 71 .66 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000008643 | ortholog_one2one | 2 retrogenes | |
| Bos taurus | ENSBTAG00000017267 | ortholog_one2one | 1 retrogene | |
| Canis familiaris | ENSCAFG00000017977 | ortholog_one2many | 1 retrogene | |
| Choloepus hoffmanni | ENSCHOG00000006108 | ortholog_one2one | 4 retrogenes | |
| Callithrix jacchus | ENSCJAG00000015613 | ortholog_one2many | 6 retrogenes | |
| Cavia porcellus | ENSCPOG00000024832 | ortholog_one2one | 3 retrogenes | |
| Felis catus | ENSFCAG00000010587 | ortholog_one2one | 3 retrogenes | |
| Homo sapiens | ENSG00000178741 | ortholog_one2one | 3 retrogenes | |
| Loxodonta africana | ENSLAFG00000006266 | ortholog_one2one | 1 retrogene | |
| Macropus eugenii | ENSMEUG00000013942 | ortholog_one2one | 2 retrogenes | |
| Myotis lucifugus | ENSMLUG00000013702 | ortholog_one2many | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000011677 | ortholog_one2one | 2 retrogenes | |
| Monodelphis domestica | ENSMODG00000028168 | ortholog_one2one | 1 retrogene | |
| Mustela putorius furo | ENSMPUG00000017314 | ortholog_one2one | 1 retrogene | |
| Mus musculus | ENSMUSG00000000088 | ortholog_one2one | 2 retrogenes | |
| Otolemur garnettii | ENSOGAG00000005611 | ortholog_one2one | 5 retrogenes | |
| Pteropus vampyrus | ENSPVAG00000012957 | ortholog_one2one | 1 retrogene | |
| Rattus norvegicus | ENSRNOG00000018816 | ortholog_one2one | 1 retrogene | |
| Sarcophilus harrisii | ENSSHAG00000015941 | ortholog_one2one | 2 retrogenes | |
| Tursiops truncatus | ENSTTRG00000008004 | ortholog_one2one | 2 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_ptro_706 | 64.35 | 76.00 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_ptro_914 | 81.62 | 89.33 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_ptro_969 | 79.87 | 98.67 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSPTRG00000007289 retrocopies