Parental gene: | TPI1, ENSPTRG00000004595 |
| Aliases: | None |
| Description: | Pan troglodytes triosephosphate isomerase 1 (TPI1), mRNA. [Source:RefSeq mRNA;Acc:NM_001071782] |
| Organism: | Chimpanzee (Pan troglodytes) |
| Coordinates: | 12:7033580..7037505(+) |
>ENSPTRG00000004595
ATGGCGCCCTCCAGGAAGTTCTTCGTTGGGGGGAACTGGAAGATGAACGGGCGGAAGCAGAGTCTGGGGGAGCTCATCGG
CACTCTGAACGCGGCCAAGGTGCCGGCCGACACCGAGGTGGTTTGTGCTCCCCCTACTGCCTATATCGACTTTGCCCGGC
AGAAGCTAGATCCCAAGATTGCTGTGGCTGCGCAGAACTGCTACAAAGTGACTAATGGGGCTTTTACTGGGGAGATCAGC
CCTGGCATGATCAAAGACTGCGGAGCCACGTGGGTGGTCCTGGGGCACTCAGAGAGAAGGCATGTCTTTGGGGAGTCAGA
TGAGCTGATTGGGCAGAAAGTGGCCCATGCTCTGGCAGAGGGACTCGGAGTAATCGCCTGCATCGGGGAGAAGCTAGATG
AAAGGGAAGCTGGCATCACTGAGAAGGTTGTTTTCGAGCAGACAAAGGTCATCGCAGATAACGTGAAGGACTGGAGCAAG
GTCGTCCTGGCCTATGAGCCTGTGTGGGCCATTGGTACTGGCAAGACTGCAACACCCCAACAGGCCCAGGAAGTACACGA
GAAGCTCCGAGGATGGCTGAAGTCCAACGTCTCTGATGCGGTGGCTCAGAGCACCCGTATCATTTATGGAGGCTCTGTGA
CTGGGGCAACCTGCAAGGAGCTGGCCAGCCAGCCTGACGTGGATGGCTTCCTTGTGGGTGGTGCTTCCCTCAAGCCCGAA
TTCGTGGACATCATCAATGCCAAACAATGA
ATGGCGCCCTCCAGGAAGTTCTTCGTTGGGGGGAACTGGAAGATGAACGGGCGGAAGCAGAGTCTGGGGGAGCTCATCGG
CACTCTGAACGCGGCCAAGGTGCCGGCCGACACCGAGGTGGTTTGTGCTCCCCCTACTGCCTATATCGACTTTGCCCGGC
AGAAGCTAGATCCCAAGATTGCTGTGGCTGCGCAGAACTGCTACAAAGTGACTAATGGGGCTTTTACTGGGGAGATCAGC
CCTGGCATGATCAAAGACTGCGGAGCCACGTGGGTGGTCCTGGGGCACTCAGAGAGAAGGCATGTCTTTGGGGAGTCAGA
TGAGCTGATTGGGCAGAAAGTGGCCCATGCTCTGGCAGAGGGACTCGGAGTAATCGCCTGCATCGGGGAGAAGCTAGATG
AAAGGGAAGCTGGCATCACTGAGAAGGTTGTTTTCGAGCAGACAAAGGTCATCGCAGATAACGTGAAGGACTGGAGCAAG
GTCGTCCTGGCCTATGAGCCTGTGTGGGCCATTGGTACTGGCAAGACTGCAACACCCCAACAGGCCCAGGAAGTACACGA
GAAGCTCCGAGGATGGCTGAAGTCCAACGTCTCTGATGCGGTGGCTCAGAGCACCCGTATCATTTATGGAGGCTCTGTGA
CTGGGGCAACCTGCAAGGAGCTGGCCAGCCAGCCTGACGTGGATGGCTTCCTTGTGGGTGGTGCTTCCCTCAAGCCCGAA
TTCGTGGACATCATCAATGCCAAACAATGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 602 .46 RPM |
| SRP007412_cerebellum | 278 .72 RPM |
| SRP007412_heart | 265 .67 RPM |
| SRP007412_kidney | 371 .36 RPM |
| SRP007412_liver | 210 .35 RPM |
| SRP007412_testis | 142 .16 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Callithrix jacchus | ENSCJAG00000007348 | ortholog_one2one | 2 retrogenes | |
| Homo sapiens | ENSG00000111669 | ortholog_one2one | 3 retrogenes | |
| Gorilla gorilla | ENSGGOG00000002623 | possible_ortholog | 1 retrogene | |
| Macropus eugenii | ENSMEUG00000006977 | ortholog_one2one | 5 retrogenes | |
| Myotis lucifugus | ENSMLUG00000024989 | ortholog_one2one | 4 retrogenes | |
| Macaca mulatta | ENSMMUG00000005194 | ortholog_one2many | 2 retrogenes | |
| Mustela putorius furo | ENSMPUG00000016774 | ortholog_one2many | 1 retrogene | |
| Mus musculus | ENSMUSG00000023456 | ortholog_one2one | 4 retrogenes | |
| Nomascus leucogenys | ENSNLEG00000004821 | ortholog_one2one | 2 retrogenes | |
| Otolemur garnettii | ENSOGAG00000031254 | ortholog_one2many | 1 retrogene | |
| Rattus norvegicus | ENSRNOG00000015290 | ortholog_one2many | 1 retrogene | |
| Rattus norvegicus | ENSRNOG00000050669 | ortholog_one2many | 2 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_ptro_160 | 96.00 | 100.00 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_ptro_1999 | 82.00 | 59.84 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_ptro_2382 | 70.75 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_ptro_2565 | 84.50 | 51.00 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSPTRG00000004595 retrocopies