Parental gene:

ATP5L, ENSPTRG00000004342

Aliases:None
Description:None
Organism:Chimpanzee (Pan troglodytes)
Coordinates:11:116323560..116332023(+)


>ENSPTRG00000004342
ATGGCCCAATTTGTCCGTAACCTTGTGGAGAAGACCCCGGCGCTGGTGAACGCTGCTGTGACTTACTCGAAGCCTCGATT
GGCCACATTTTGGTACTACGCCAAGGTTGAGCTGGTTCCTCCCACCCCTGCTGAGATCCCTAGAGCTATTCAGAGCCTGA
AAAAAATAGTCAATAGTGCTCAGACTGGTAGCTTCAAACAGCTCACAGTTAAGGAAGCTGTGCTGAATGGTTTGGTGGCC
ACTGAGGTGTTGATGTGGTTTTATGTCGGAGAGATTATAGGCAAGCGGGGCATCATTGGCTATGATGTTTGA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 70 .66 RPM
SRP007412_cerebellum 40 .65 RPM
SRP007412_heart 121 .71 RPM
SRP007412_kidney 119 .83 RPM
SRP007412_liver 44 .32 RPM
SRP007412_testis 30 .56 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000007332 ortholog_one2many 2 retrogenes
retro_btau_105, retro_btau_245,
Choloepus hoffmanni ENSCHOG00000010589 ortholog_one2one 3 retrogenes
retro_chof_1454, retro_chof_1865, retro_chof_2204,
Callithrix jacchus ENSCJAG00000013281 ortholog_one2many 1 retrogene
retro_cjac_283,
Dasypus novemcinctus ENSDNOG00000019354 ortholog_one2one 5 retrogenes
retro_dnov_1491, retro_dnov_1872, retro_dnov_2169, retro_dnov_2341, retro_dnov_344,
Equus caballus ENSECAG00000023715 ortholog_one2one 1 retrogene
retro_ecab_434,
Erinaceus europaeus ENSEEUG00000009863 ortholog_one2one 7 retrogenes
retro_eeur_106, retro_eeur_111, retro_eeur_333, retro_eeur_495, retro_eeur_499, retro_eeur_589, retro_eeur_606,
Echinops telfairi ENSETEG00000008755 ortholog_one2one 11 retrogenes
retro_etel_1239, retro_etel_166, retro_etel_1884, retro_etel_1885, retro_etel_2183, retro_etel_241, retro_etel_254, retro_etel_355, retro_etel_822, retro_etel_876, retro_etel_995,
Felis catus ENSFCAG00000011782 possible_ortholog 4 retrogenes
retro_fcat_1358, retro_fcat_1615, retro_fcat_1941, retro_fcat_371,
Homo sapiens ENSG00000167283 ortholog_one2one 5 retrogenes
retro_hsap_3029, retro_hsap_3110, retro_hsap_63, retro_hsap_860, retro_hsap_883,
Loxodonta africana ENSLAFG00000030274 ortholog_one2many 3 retrogenes
retro_lafr_1209, retro_lafr_135, retro_lafr_3,
Macropus eugenii ENSMEUG00000015281 ortholog_one2one 1 retrogene
retro_meug_1774,
Microcebus murinus ENSMICG00000015233 ortholog_one2one 6 retrogenes
retro_mmur_1428, retro_mmur_237, retro_mmur_365, retro_mmur_513, retro_mmur_700, retro_mmur_725,
Macaca mulatta ENSMMUG00000017604 ortholog_one2one 4 retrogenes
retro_mmul_1333, retro_mmul_22, retro_mmul_25, retro_mmul_262,
Mus musculus ENSMUSG00000038717 ortholog_one2many 1 retrogene
retro_mmus_139,
Nomascus leucogenys ENSNLEG00000007362 ortholog_one2one 6 retrogenes
retro_nleu_425, retro_nleu_608, retro_nleu_765, retro_nleu_81, retro_nleu_841, retro_nleu_846,
Oryctolagus cuniculus ENSOCUG00000029455 ortholog_one2one 4 retrogenes
retro_ocun_1140, retro_ocun_1156, retro_ocun_1418, retro_ocun_567,
Otolemur garnettii ENSOGAG00000016298 ortholog_one2many 10 retrogenes
retro_ogar_1097, retro_ogar_1102, retro_ogar_176, retro_ogar_3286, retro_ogar_3332, retro_ogar_352, retro_ogar_433, retro_ogar_444, retro_ogar_533, retro_ogar_573,
Pongo abelii ENSPPYG00000003933 ortholog_one2one 5 retrogenes
retro_pabe_1913, retro_pabe_2508, retro_pabe_2568, retro_pabe_2589, retro_pabe_688,
Rattus norvegicus ENSRNOG00000028884 ortholog_one2one 19 retrogenes
retro_rnor_1145, retro_rnor_1160, retro_rnor_1185, retro_rnor_1319, retro_rnor_1345, retro_rnor_1379, retro_rnor_1420, retro_rnor_1468, retro_rnor_1993, retro_rnor_2258, retro_rnor_2271, retro_rnor_2404, retro_rnor_2573, retro_rnor_2650, retro_rnor_2723, retro_rnor_2735, retro_rnor_2929, retro_rnor_660, retro_rnor_698,
Sus scrofa ENSSSCG00000023777 ortholog_one2one 5 retrogenes
retro_sscr_196, retro_sscr_270, retro_sscr_378, retro_sscr_463, retro_sscr_500,
Ictidomys tridecemlineatus ENSSTOG00000014400 ortholog_one2one 2 retrogenes
retro_itri_1649, retro_itri_332,
Tupaia belangeri ENSTBEG00000009999 ortholog_one2one 4 retrogenes
retro_tbel_1364, retro_tbel_4005, retro_tbel_857, retro_tbel_959,
Tarsius syrichta ENSTSYG00000002686 ortholog_one2one 4 retrogenes
retro_tsyr_1516, retro_tsyr_1688, retro_tsyr_2166, retro_tsyr_578,
Tursiops truncatus ENSTTRG00000004284 ortholog_one2one 9 retrogenes
retro_ttru_1088, retro_ttru_1125, retro_ttru_1255, retro_ttru_1537, retro_ttru_1781, retro_ttru_541, retro_ttru_716, retro_ttru_810, retro_ttru_972,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ptro_597 71.84 100.00
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2. retro_ptro_1518 88.35 100.00
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3. retro_ptro_2043 78.89 86.41
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4. retro_ptro_2102 70.19 100.00
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5. retro_ptro_2478 92.31 100.00
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Download FASTA sequences of all ENSPTRG00000004342 retrocopies