Parental gene: | RPLP2, ENSPTRG00000003137 |
| Aliases: | None |
| Description: | ribosomal protein, large, P2 [Source:HGNC Symbol;Acc:10377] |
| Organism: | Chimpanzee (Pan troglodytes) |
| Coordinates: | 11:868222..871152(+) |
>ENSPTRG00000003137
ATGCGCTACGTCGCCTCCTACCTGCTGGCTGCCCTAGGGGGCAACTCCTCCCCCAGCGCCAAGGACATCAAGAAGATCTT
GGACAGCGTGGGTATCGAGGCGGACGACGACCGGCTCAACAAGGTTATCAGTGAGCTGAATGGAAAAAACATTGAAGACG
TCATTGCCCAGGGTATTGGCAAGCTTGCCAGTGTACCTGCCGGTGGGGCTGTAGCTGTCTCTGCTGCCCCAGGTTCTGCA
GCCCCTGCTGCTGGTTCTGCCCCTGCTGCAGCAGAGGAGAAGAAAGATGAGAAGAAGGAGGAGTCTGAAGAGTCAGACGA
TGACATGGGATTTGGCCTTTTTGATTAA
ATGCGCTACGTCGCCTCCTACCTGCTGGCTGCCCTAGGGGGCAACTCCTCCCCCAGCGCCAAGGACATCAAGAAGATCTT
GGACAGCGTGGGTATCGAGGCGGACGACGACCGGCTCAACAAGGTTATCAGTGAGCTGAATGGAAAAAACATTGAAGACG
TCATTGCCCAGGGTATTGGCAAGCTTGCCAGTGTACCTGCCGGTGGGGCTGTAGCTGTCTCTGCTGCCCCAGGTTCTGCA
GCCCCTGCTGCTGGTTCTGCCCCTGCTGCAGCAGAGGAGAAGAAAGATGAGAAGAAGGAGGAGTCTGAAGAGTCAGACGA
TGACATGGGATTTGGCCTTTTTGATTAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 116 .51 RPM |
| SRP007412_cerebellum | 52 .77 RPM |
| SRP007412_heart | 49 .05 RPM |
| SRP007412_kidney | 175 .71 RPM |
| SRP007412_liver | 152 .80 RPM |
| SRP007412_testis | 26 .77 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Bos taurus | ENSBTAG00000001777 | possible_ortholog | 2 retrogenes | |
| Canis familiaris | ENSCAFG00000009523 | possible_ortholog | 1 retrogene | |
| Ciona intestinalis | ENSCING00000000626 | ortholog_one2one | 1 retrogene | |
| Dipodomys ordii | ENSDORG00000016458 | ortholog_one2one | 3 retrogenes | |
| Felis catus | ENSFCAG00000008417 | possible_ortholog | 1 retrogene | |
| Homo sapiens | ENSG00000177600 | ortholog_one2one | 5 retrogenes | |
| Gorilla gorilla | ENSGGOG00000010789 | ortholog_one2one | 5 retrogenes | |
| Mus musculus | ENSMUSG00000025508 | ortholog_one2one | 4 retrogenes | |
| Nomascus leucogenys | ENSNLEG00000026860 | ortholog_one2one | 5 retrogenes | |
| Otolemur garnettii | ENSOGAG00000016296 | possible_ortholog | 2 retrogenes | |
| Pongo abelii | ENSPPYG00000002885 | ortholog_one2one | 6 retrogenes | |
| Rattus norvegicus | ENSRNOG00000002116 | ortholog_one2many | 3 retrogenes | |
| Sarcophilus harrisii | ENSSHAG00000001056 | ortholog_one2one | 1 retrogene | |
| Sus scrofa | ENSSSCG00000012842 | possible_ortholog | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_ptro_572 | 92.86 | 97.39 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_ptro_764 | 60.58 | 88.70 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_ptro_1189 | 81.74 | 99.13 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_ptro_2307 | 83.62 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_ptro_2332 | 73.53 | 87.83 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSPTRG00000003137 retrocopies