Parental gene:

TOMM20, ENSPTRG00000002127

Aliases:None
Description:None
Organism:Chimpanzee (Pan troglodytes)
Coordinates:1:214389683..214409254(-)


>ENSPTRG00000002127
ATGGTGGGTCGGAACAGTGCCATCGCCGCCGGTGTATGCGGGGCCCTTTTCATTGGGTACTGCATCTACTTCGATCGCAA
AAGACGAAGTGACCCCAACTTCAAGAACAGGCTTCGAGAACGAAGAAAGAAACAGAAGCTTGCCAAGGAGAGAGCTGGGC
TTTCCAAGTTACCTGACCTTAAAGATGCTGAAGCTGTTCAGAAGTTCTTCCTTGAAGAAATACAGCTTGGTGAAGAGTTA
CTAGCTCAAGGTGAATATGAGAAGGGCGTAGACCATCTGACAAATGCAATTGCTGTGTGTGGACAGCCACAGCAGTTACT
GCAGGTCTTACAGCAAACTCTTCCACCACCAGTGTTCCAGATGCTTCTGACTAAGCTCCCAACAATTAGTCAGAGAATTG
TAAGTGCTCAGAGCTTGGCTGAAGATGATGTGGAATGA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 200 .62 RPM
SRP007412_cerebellum 195 .41 RPM
SRP007412_heart 92 .36 RPM
SRP007412_kidney 111 .80 RPM
SRP007412_liver 75 .29 RPM
SRP007412_testis 41 .63 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000000562 possible_ortholog 5 retrogenes
retro_btau_1025, retro_btau_1147, retro_btau_1357, retro_btau_492, retro_btau_533,
Choloepus hoffmanni ENSCHOG00000002383 ortholog_one2one 7 retrogenes
retro_chof_1381, retro_chof_1699, retro_chof_2252, retro_chof_2497, retro_chof_2511, retro_chof_415, retro_chof_901,
Callithrix jacchus ENSCJAG00000018127 ortholog_one2one 3 retrogenes
retro_cjac_1860, retro_cjac_2420, retro_cjac_918,
Echinops telfairi ENSETEG00000017693 ortholog_one2one 4 retrogenes
retro_etel_1224, retro_etel_130, retro_etel_1514, retro_etel_559,
Homo sapiens ENSG00000173726 ortholog_one2one 5 retrogenes
retro_hsap_1827, retro_hsap_1906, retro_hsap_3866, retro_hsap_4702, retro_hsap_796,
Gorilla gorilla ENSGGOG00000025184 ortholog_one2one 5 retrogenes
retro_ggor_1395, retro_ggor_2166, retro_ggor_2606, retro_ggor_2923, retro_ggor_656,
Loxodonta africana ENSLAFG00000015499 ortholog_one2one 1 retrogene
retro_lafr_436,
Myotis lucifugus ENSMLUG00000016218 ortholog_one2one 1 retrogene
retro_mluc_644,
Macaca mulatta ENSMMUG00000007136 ortholog_one2many 2 retrogenes
retro_mmul_1255, retro_mmul_273,
Monodelphis domestica ENSMODG00000008452 ortholog_one2many 6 retrogenes
retro_mdom_1112, retro_mdom_1172, retro_mdom_1297, retro_mdom_1527, retro_mdom_1568, retro_mdom_838,
Mus musculus ENSMUSG00000093904 ortholog_one2one 12 retrogenes
retro_mmus_1437, retro_mmus_1669, retro_mmus_1698, retro_mmus_1990, retro_mmus_2026, retro_mmus_2141, retro_mmus_3142, retro_mmus_3311, retro_mmus_3637, retro_mmus_3655, retro_mmus_457, retro_mmus_935,
Pongo abelii ENSPPYG00000000099 ortholog_one2one 4 retrogenes
retro_pabe_1497, retro_pabe_1553, retro_pabe_3650, retro_pabe_708,
Rattus norvegicus ENSRNOG00000019980 ortholog_one2one 4 retrogenes
retro_rnor_1191, retro_rnor_1958, retro_rnor_1983, retro_rnor_2103,
Sarcophilus harrisii ENSSHAG00000015876 ortholog_one2one 3 retrogenes
retro_shar_272, retro_shar_512, retro_shar_669,
Ictidomys tridecemlineatus ENSSTOG00000027564 ortholog_one2many 3 retrogenes
retro_itri_248, retro_itri_71, retro_itri_820,
Tupaia belangeri ENSTBEG00000003827 ortholog_one2one 26 retrogenes
retro_tbel_1483, retro_tbel_2215, retro_tbel_2239, retro_tbel_2240, retro_tbel_2340, retro_tbel_2348, retro_tbel_2440, retro_tbel_2472, retro_tbel_2548, retro_tbel_2610, retro_tbel_2619, retro_tbel_3000, retro_tbel_3182, retro_tbel_3204, retro_tbel_3674, retro_tbel_3687, retro_tbel_3729, retro_tbel_3808, retro_tbel_3895, retro_tbel_3949, retro_tbel_4068, retro_tbel_4096, retro_tbel_4136, retro_tbel_4596, retro_tbel_4625, retro_tbel_600,
Vicugna pacos ENSVPAG00000003980 ortholog_one2one 1 retrogene
retro_vpac_252,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ptro_554 90.00 89.66
Please wait, loading
Please wait, loading
Please wait, loading
2. retro_ptro_1166 75.90 55.86
Please wait, loading
Please wait, loading
Please wait, loading
3. retro_ptro_1252 68.87 72.41
Please wait, loading
Please wait, loading
Please wait, loading
4. retro_ptro_2634 91.53 81.38
Please wait, loading
Please wait, loading
Please wait, loading
5. retro_ptro_3124 93.79 100.00
Please wait, loading
Please wait, loading
Please wait, loading
Download FASTA sequences of all ENSPTRG00000002127 retrocopies