Parental gene: | CBX3, ENSPPYG00000017714 |
| Aliases: | None |
| Description: | Chromobox protein homolog 3 [Source:UniProtKB/Swiss-Prot;Acc:Q5R6X7] |
| Organism: | Orangutan (Pongo abelii) |
| Coordinates: | 7:58239880..58252706(-) |
>ENSPPYG00000017714
ATGGCCTCCAATAAAACTACATTGCAAAAAATGGGAAAAAAACAGAATGGAAAGAGTAAAAAAGTTGAAGAGGCAGAGCC
TGAAGAATTTGTGGTGGAAAAAGTACTAGATCGACGTGTAGTGAATGGGAAAGTGGAATATTTCCTGAAGTGGAAGGGAT
TTACAGATGCTGACAATACTTGGGAACCTGAAGAAAATTTAGATTGTCCAGAATTGATTGAAGCATTTCTTAACTCTCAG
AAAGCTGGCAAAGAAAAAGATGGTACAAAAAGAAAATCTTTATCTGACAGTGAATCTGATGACAGCAAATCAAAGAAGAA
AAGAGATGCTGCTGACAAACCAAGAGGATTTGCCAGAGGTCTTGATCCCGAAAGAATAATTGGTGCCACAGACAGCAGTG
GAGAATTGATGTTTCTCATGAAATGGAAAGATTCAGATGAGGCAGACTTGGTGCTGGCAAAAGAGGCAAATATGAAGTGT
CCTCAAATTGTAATTGCTTTTTATGAAGAGAGACTAACTTGGCATTCTTGTCCAGAAGATGAAGCTCAATAA
ATGGCCTCCAATAAAACTACATTGCAAAAAATGGGAAAAAAACAGAATGGAAAGAGTAAAAAAGTTGAAGAGGCAGAGCC
TGAAGAATTTGTGGTGGAAAAAGTACTAGATCGACGTGTAGTGAATGGGAAAGTGGAATATTTCCTGAAGTGGAAGGGAT
TTACAGATGCTGACAATACTTGGGAACCTGAAGAAAATTTAGATTGTCCAGAATTGATTGAAGCATTTCTTAACTCTCAG
AAAGCTGGCAAAGAAAAAGATGGTACAAAAAGAAAATCTTTATCTGACAGTGAATCTGATGACAGCAAATCAAAGAAGAA
AAGAGATGCTGCTGACAAACCAAGAGGATTTGCCAGAGGTCTTGATCCCGAAAGAATAATTGGTGCCACAGACAGCAGTG
GAGAATTGATGTTTCTCATGAAATGGAAAGATTCAGATGAGGCAGACTTGGTGCTGGCAAAAGAGGCAAATATGAAGTGT
CCTCAAATTGTAATTGCTTTTTATGAAGAGAGACTAACTTGGCATTCTTGTCCAGAAGATGAAGCTCAATAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 35 .05 RPM |
| SRP007412_cerebellum | 54 .60 RPM |
| SRP007412_heart | 29 .92 RPM |
| SRP007412_kidney | 36 .53 RPM |
| SRP007412_liver | 25 .25 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Canis familiaris | ENSCAFG00000002897 | possible_ortholog | 11 retrogenes | |
| Callithrix jacchus | ENSCJAG00000007952 | possible_ortholog | 8 retrogenes | |
| Dipodomys ordii | ENSDORG00000005487 | ortholog_one2one | 11 retrogenes | |
| Loxodonta africana | ENSLAFG00000006907 | possible_ortholog | 3 retrogenes | |
| Myotis lucifugus | ENSMLUG00000007591 | ortholog_one2one | 2 retrogenes | |
| Mus musculus | ENSMUSG00000029836 | ortholog_one2one | 1 retrogene | |
| Otolemur garnettii | ENSOGAG00000016583 | possible_ortholog | 1 retrogene | |
| Ochotona princeps | ENSOPRG00000011713 | ortholog_one2one | 9 retrogenes | |
| Pongo abelii | ENSPPYG00000004599 | within_species_paralog | 1 retrogene | |
| Pongo abelii | ENSPPYG00000008891 | within_species_paralog | 1 retrogene | |
| Rattus norvegicus | ENSRNOG00000011814 | possible_ortholog | 2 retrogenes | |
| Sarcophilus harrisii | ENSSHAG00000017913 | ortholog_one2one | 1 retrogene | |
| Sus scrofa | ENSSSCG00000016711 | ortholog_one2one | 4 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_pabe_758 | 90.24 | 87.98 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_pabe_786 | 70.91 | 87.98 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_pabe_892 | 67.35 | 53.55 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_pabe_951 | 88.83 | 96.72 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_pabe_2112 | 63.33 | 97.81 | Please wait, loading | Please wait, loading | Please wait, loading |
| 6. | retro_pabe_2243 | 76.24 | 55.19 | Please wait, loading | Please wait, loading | Please wait, loading |
| 7. | retro_pabe_2724 | 64.03 | 74.86 | Please wait, loading | Please wait, loading | Please wait, loading |
| 8. | retro_pabe_2770 | 81.42 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 9. | retro_pabe_2997 | 91.98 | 87.98 | Please wait, loading | Please wait, loading | Please wait, loading |
| 10. | retro_pabe_3608 | 71.60 | 86.89 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSPPYG00000017714 retrocopies