Parental gene: | RPS23, ENSPPYG00000015608 |
| Aliases: | None |
| Description: | ribosomal protein S23 [Source:HGNC Symbol;Acc:10410] |
| Organism: | Orangutan (Pongo abelii) |
| Coordinates: | 5:82495237..82502151(-) |
>ENSPPYG00000015608
ATGGGCAAGTGTCGTGGACTTCGTACTGCTAGGAAGCTCCGTAGTCACCGACGAGACCAGAAGTGGCATGATAAACAGTA
TAAGAAAGCTCATTTGGGCACAGCCCTGAAGGCCAACCCTTTTGGAGGTGCTTCTCATGCAAAAGGAATCGTGCTGGAAA
AAGTAGGAGTTGAAGCCAAACAGCCAAATTCTGCCATTAGGAAGTGTGTCAGGGTCCAGCTGATCAAGAATGGCAAGAAA
ATCACAGCCTTTGTACCCAACGACGGTTGCTTGAACTTTATTGAGGAAAACGATGAAGTTCTGGTTGCTGGATTTGGTCG
CAAAGGTCATGCTGTTGGTGATATTCCTGGAGTCCGCTTTAAGGTTGTCAAAGTAGCCAATGTGTCTCTTTTGGCCCTAT
ACAAAGGCAAGAAGGAAAGACCAAGATCATAA
ATGGGCAAGTGTCGTGGACTTCGTACTGCTAGGAAGCTCCGTAGTCACCGACGAGACCAGAAGTGGCATGATAAACAGTA
TAAGAAAGCTCATTTGGGCACAGCCCTGAAGGCCAACCCTTTTGGAGGTGCTTCTCATGCAAAAGGAATCGTGCTGGAAA
AAGTAGGAGTTGAAGCCAAACAGCCAAATTCTGCCATTAGGAAGTGTGTCAGGGTCCAGCTGATCAAGAATGGCAAGAAA
ATCACAGCCTTTGTACCCAACGACGGTTGCTTGAACTTTATTGAGGAAAACGATGAAGTTCTGGTTGCTGGATTTGGTCG
CAAAGGTCATGCTGTTGGTGATATTCCTGGAGTCCGCTTTAAGGTTGTCAAAGTAGCCAATGTGTCTCTTTTGGCCCTAT
ACAAAGGCAAGAAGGAAAGACCAAGATCATAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 66 .07 RPM |
| SRP007412_cerebellum | 93 .75 RPM |
| SRP007412_heart | 91 .24 RPM |
| SRP007412_kidney | 170 .84 RPM |
| SRP007412_liver | 127 .18 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Anolis carolinensis | ENSACAG00000011136 | ortholog_one2one | 1 retrogene | |
| Bos taurus | ENSBTAG00000013358 | possible_ortholog | 3 retrogenes | |
| Callithrix jacchus | ENSCJAG00000011247 | possible_ortholog | 2 retrogenes | |
| Dipodomys ordii | ENSDORG00000001813 | possible_ortholog | 2 retrogenes | |
| Macropus eugenii | ENSMEUG00000012931 | possible_ortholog | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000003578 | possible_ortholog | 4 retrogenes | |
| Mus musculus | ENSMUSG00000049517 | ortholog_one2one | 12 retrogenes | |
| Pteropus vampyrus | ENSPVAG00000002083 | possible_ortholog | 4 retrogenes | |
| Rattus norvegicus | ENSRNOG00000016580 | ortholog_one2one | 12 retrogenes | |
| Sarcophilus harrisii | ENSSHAG00000008347 | ortholog_one2one | 2 retrogenes | |
| Tursiops truncatus | ENSTTRG00000014491 | ortholog_one2one | 6 retrogenes | |
| Vicugna pacos | ENSVPAG00000009427 | possible_ortholog | 7 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_pabe_19 | 87.41 | 100.00 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_pabe_1538 | 78.26 | 77.62 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_pabe_1585 | 98.60 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_pabe_2515 | 66.43 | 99.30 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_pabe_2567 | 68.69 | 69.23 | Please wait, loading | Please wait, loading | Please wait, loading |
| 6. | retro_pabe_2716 | 68.29 | 83.22 | Please wait, loading | Please wait, loading | Please wait, loading |
| 7. | retro_pabe_3129 | 96.50 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSPPYG00000015608 retrocopies