Parental gene:

DKFZP469I1935, ENSPPYG00000014384

Aliases:None
Description:Eukaryotic initiation factor 4A-II [Source:UniProtKB/Swiss-Prot;Acc:Q5R4X1]
Organism:Orangutan (Pongo abelii)
Coordinates:3:190573151..190581542(+)


>ENSPPYG00000014384
ATGTCTGGTGGCTCCGCGGATTATAACAGAGAACATGGCGGCCCAGAGGGAATGGACCCCGATGGTGTCATCGAGAGCAA
CTGGAATGAGATTGTTGATAACTTTGATGATATGAATTTAAAGGAGTCTCTTCTTCGTGGCATCTATGCTTACGGTTTTG
AGAAGCCTTCCGCTATTCAGCAGAGAGCTATTATTCCCTGTATTAAAGGGTATGATGTGATTGCTCAAGCTCAGTCAGGT
ACTGGCAAGACAGCCACATTTGCTATTTCCATCCTGCAACAGTTGGAGATTGAGTTCAAGGAGACCCAAGCACTAGTATT
GGCCCCCACCAGAGAACTGGCTCAACAGATCCAAAAGGTAATTCTGGCACTTGGAGACTATATGGGAGCCACTTGTCATG
CCTGCATTGGTGGAACAAATGTTCGAAATGAAATGCAAAAACTGCAGGCTGAAGCACCACATATTGTTGTTGGTACACCC
GGGAGAGTGTTTGATATGTTAAACAGAAGATACCTTTCTCCAAAATGGATCAAAATGTTTGTTTTGGATGAAGCAGATGA
AATGTTGAGCCGTGGTTTTAAGGATCAAATCTATGAGATTTTCCAAAAACTAAACACAAGTATCCAGGTTGTGTTGCTTT
CTGCCACAATGCCAACTGATGTGTTGGAAGTGACCAAAAAATTCATGAGAGATCCAATTCGAATTCTGGTGAAAAAGGAA
GAATTGACCCTTGAAGGAATCAAACAGTTTTATATTAATGTTGAGAGAGAGGAGTGGAAGTTGGATACACTTTGTGACTT
GTACGAGACACTGACCATCACGCAGGCTGTTATTTTTCTCAATACGAGGCGCAAGGTGGACTGGCTGACTGAGAAAATGC
ATGCCAGAGACTTCACAGTTTCTGCTCTGCATGGTGACATGGACCAGAAGGAGAGAGATGTTATCATGAGGGAATTCCGG
TCAGGGTCAAGTCGTGTTCTGATCACTACTGACTTGTTGGCTCGCGGGATTGATGTGCAACAAGTGTCTTTGGTTATAAA
TTATGATCTACCTACCAATCGTGAAAACTATATTCACAGAATTGGCAGAGGGGGTCGATTTGGGAGGAAAGGTGTGGCTA
TAAACTTTGTTACTGAAGAAGACAAGAGGATTCTTCGTGACATTGAGACTTTCTACAATACTACAGTGGAGGAGATGCCC
ATGAATGTGGCTGACCTTATTTAA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 698 .76 RPM
SRP007412_cerebellum 674 .04 RPM
SRP007412_heart 314 .82 RPM
SRP007412_kidney 319 .93 RPM
SRP007412_liver 212 .38 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000014724 ortholog_one2one 2 retrogenes
retro_btau_258, retro_btau_522,
Canis familiaris ENSCAFG00000013659 ortholog_one2one 1 retrogene
retro_cfam_378,
Cavia porcellus ENSCPOG00000011183 ortholog_one2one 1 retrogene
retro_cpor_639,
Dasypus novemcinctus ENSDNOG00000011502 ortholog_one2one 5 retrogenes
retro_dnov_1264, retro_dnov_2018, retro_dnov_2066, retro_dnov_648, retro_dnov_869,
Echinops telfairi ENSETEG00000018565 ortholog_one2one 3 retrogenes
retro_etel_1174, retro_etel_2164, retro_etel_451,
Homo sapiens ENSG00000156976 ortholog_one2one 2 retrogenes
retro_hsap_593, retro_hsap_878,
Gorilla gorilla ENSGGOG00000005867 ortholog_one2one 2 retrogenes
retro_ggor_525, retro_ggor_712,
Macropus eugenii ENSMEUG00000011737 ortholog_one2one 1 retrogene
retro_meug_237,
Microcebus murinus ENSMICG00000007377 ortholog_one2one 1 retrogene
retro_mmur_525,
Macaca mulatta ENSMMUG00000003702 ortholog_one2many 2 retrogenes
retro_mmul_1055, retro_mmul_2450,
Nomascus leucogenys ENSNLEG00000006633 ortholog_one2one 1 retrogene
retro_nleu_2589,
Oryctolagus cuniculus ENSOCUG00000005011 ortholog_one2one 3 retrogenes
retro_ocun_392, retro_ocun_696, retro_ocun_763,
Otolemur garnettii ENSOGAG00000010729 ortholog_one2one 2 retrogenes
retro_ogar_2830, retro_ogar_943,
Ochotona princeps ENSOPRG00000004170 ortholog_one2one 1 retrogene
retro_opri_498,
Pongo abelii ENSPPYG00000007926 within_species_paralog 7 retrogenes
retro_pabe_1090, retro_pabe_1474, retro_pabe_3759, retro_pabe_3792, retro_pabe_548, retro_pabe_846, retro_pabe_987,
Pan troglodytes ENSPTRG00000015718 ortholog_one2one 1 retrogene
retro_ptro_437,
Rattus norvegicus ENSRNOG00000001815 ortholog_one2one 2 retrogenes
retro_rnor_1163, retro_rnor_2340,
Ictidomys tridecemlineatus ENSSTOG00000012601 ortholog_one2one 1 retrogene
retro_itri_858,
Tupaia belangeri ENSTBEG00000002268 ortholog_one2one 11 retrogenes
retro_tbel_114, retro_tbel_1488, retro_tbel_1500, retro_tbel_2048, retro_tbel_2524, retro_tbel_2729, retro_tbel_2733, retro_tbel_3159, retro_tbel_3793, retro_tbel_4599, retro_tbel_841,
Takifugu rubripes ENSTRUG00000005660 ortholog_one2one 2 retrogenes
retro_trub_14, retro_trub_6,
Tarsius syrichta ENSTSYG00000013050 ortholog_one2one 3 retrogenes
retro_tsyr_1905, retro_tsyr_903, retro_tsyr_935,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_596 80.55 70.76
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2. retro_pabe_677 79.35 60.44
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Download FASTA sequences of all ENSPPYG00000014384 retrocopies