Parental gene:

IFT20, ENSPPYG00000008087

Aliases:None
Description:intraflagellar transport 20 homolog (Chlamydomonas) [Source:HGNC Symbol;Acc:30989]
Organism:Orangutan (Pongo abelii)
Coordinates:17:22971836..22981162(-)


>ENSPPYG00000008087
ATGACACACCTCCTCCTGACTGCCACTGTCACTCCTTCAGAGCAGAACTCCTCTAGGGAACCTGGATGGGAAACAGCCAT
GGCCAAGGACATCCTGGGTGAAGCAGGGCTGCACTTTGATGAACTGAACAAGCTGAGGGTGTTGGACCCAGAGGTTACCC
AGCAGACCATAGAGCTGAAGGAAGAGTGCAAAGACTTTGTGGACAAAATTGGCCAGTTTCAGAAAATAGTTGGTGGTTTA
ATTGAGCTTGTTGATCAACTTGCAAAAGAAGCAGAAAATGAAAAGATGAAGGCCATCGGTGCTCGGAACTTGCTCAAATC
TATAGCAAAGCAGAGAGAAGCTCAACAGCAGCAACTTCAAGCTCTAATAGCAGAAAAGAAAATGCAGCTAGAAAGGTATC
GGGTTGAATATGAAGCTTTGTGTAAAGTAGAAGCAGATCTAAATGAATTTATTGACCAATTTATTTTTCAGAAATGA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 13 .60 RPM
SRP007412_cerebellum 22 .98 RPM
SRP007412_heart 3 .46 RPM
SRP007412_kidney 10 .31 RPM
SRP007412_liver 13 .19 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000005111 ortholog_one2one 2 retrogenes
retro_amel_1011, retro_amel_1337,
Bos taurus ENSBTAG00000008110 ortholog_one2one 1 retrogene
retro_btau_257,
Callithrix jacchus ENSCJAG00000012534 ortholog_one2one 2 retrogenes
retro_cjac_2404, retro_cjac_687,
Cavia porcellus ENSCPOG00000003153 ortholog_one2one 1 retrogene
retro_cpor_152,
Echinops telfairi ENSETEG00000018843 ortholog_one2one 2 retrogenes
retro_etel_1045, retro_etel_1181,
Homo sapiens ENSG00000109083 ortholog_one2one 1 retrogene
retro_hsap_1314,
Gorilla gorilla ENSGGOG00000004568 ortholog_one2one 2 retrogenes
retro_ggor_1026, retro_ggor_1217,
Microcebus murinus ENSMICG00000005074 ortholog_one2one 1 retrogene
retro_mmur_987,
Myotis lucifugus ENSMLUG00000008709 ortholog_one2many 2 retrogenes
retro_mluc_180, retro_mluc_1924,
Macaca mulatta ENSMMUG00000019143 ortholog_one2one 2 retrogenes
retro_mmul_2165, retro_mmul_2234,
Monodelphis domestica ENSMODG00000019233 ortholog_one2one 1 retrogene
retro_mdom_681,
Mustela putorius furo ENSMPUG00000014353 ortholog_one2one 1 retrogene
retro_mputfur_247,
Mus musculus ENSMUSG00000001105 ortholog_one2one 1 retrogene
retro_mmus_3245,
Nomascus leucogenys ENSNLEG00000001883 ortholog_one2one 2 retrogenes
retro_nleu_1067, retro_nleu_1941,
Oryctolagus cuniculus ENSOCUG00000007773 ortholog_one2one 1 retrogene
retro_ocun_438,
Otolemur garnettii ENSOGAG00000003333 ortholog_one2one 2 retrogenes
retro_ogar_1169, retro_ogar_72,
Ochotona princeps ENSOPRG00000005826 ortholog_one2one 6 retrogenes
retro_opri_110, retro_opri_1185, retro_opri_205, retro_opri_293, retro_opri_375, retro_opri_872,
Sus scrofa ENSSSCG00000023719 ortholog_one2one 1 retrogene
retro_sscr_315,
Ictidomys tridecemlineatus ENSSTOG00000007554 ortholog_one2one 1 retrogene
retro_itri_713,
Tupaia belangeri ENSTBEG00000005557 ortholog_one2one 2 retrogenes
retro_tbel_180, retro_tbel_1954,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_1097 83.85 79.75
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2. retro_pabe_1322 65.93 82.91
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Download FASTA sequences of all ENSPPYG00000008087 retrocopies