Parental gene:

HNRNPC, ENSPPYG00000005593

Aliases:HNRNPC, HNRPC
Description:Heterogeneous nuclear ribonucleoprotein C [Source:UniProtKB/Swiss-Prot;Acc:Q5RA82]
Organism:Orangutan (Pongo abelii)
Coordinates:14:20569629..20634603(-)


>ENSPPYG00000005593
ATGGCCAGCAACGTTACCAACAAGACAGATCCTCGCTCCATGAACTCCCGTGTATTCATTGGGAATCTCAACACTCTTGT
GGTCAAGAAATCTGATGTGGAGGCAATCTTTTCGAAGTATGGCAAAATTGTGGGCTGCTCTGTTCATAAGGGCTTTGCCT
TCGTTCAATATGTTAATGAGAGAAATGCCCGGGCTGCTGTAGCAGGAGAGGATGGCAGAATGATTGCTGGCCAGGTTTTA
GATATTAACCTGGCTGCAGAGCCAAAAGTGAACCGAGGAAAAGCAGGTGTGAAACGATCTGCAGCGGAGATGTACGGGTC
AGTAACAGAACACCCTTCTCCGTCCCCTCTACTCAGCTCCTCTTTTGACTTGGACTATGACTTTCAACGGGACTATTATG
ATAGGATGTACAGTTACCCAGCACGTGTACCTCCTCCTCCTCCTATTGCTCGGGCTGTAGTGCCCTCGAAACGTCAGCGT
GTATCAGGAAACACCTCACGAAGGGGCAAAAGTGGCTTCAATTCTAAGAGTGGACAGCGGGGATCTTCCAAGTCTGGAAA
GTTGAAAGGAGATGACCTTCAGGCCATTAAGAAGGAGCTGACCCAGATAAAACAAAAAGTGGATTCTCTCCTGGAAAACC
TGGAAAAAATTGAAAAGGAACAGAGCAAACAAGCAGTAGAGATGAAGAATGATAAGTCAGAAGAGGAGCAGAGCAGCAGC
TCCGTGAAGAAAGATGAGACTAATGTGAAGATGGAGTCTGAGGGGGGTGCAGATGACTCTGCTGAAGAGGGGGACCTACT
GGATGATGATGATAATGAAGATCGGGGGGATGACCAGCTGGAGTTGATCAAGGATGATGAAAAAGAGGCTGAGGAAGGAG
AGGATGACAGAGACAGCGCCAATGGCGAGGATGACTCTTAA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 198 .11 RPM
SRP007412_cerebellum 239 .43 RPM
SRP007412_heart 117 .25 RPM
SRP007412_kidney 280 .39 RPM
SRP007412_liver 272 .08 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000011396 possible_ortholog 2 retrogenes
retro_btau_1084, retro_btau_1142,
Canis familiaris ENSCAFG00000005504 possible_ortholog 1 retrogene
retro_cfam_1140,
Homo sapiens ENSG00000092199 ortholog_one2one 2 retrogenes
retro_hsap_1624, retro_hsap_3740,
Gorilla gorilla ENSGGOG00000023015 ortholog_one2one 1 retrogene
retro_ggor_1046,
Microcebus murinus ENSMICG00000007682 possible_ortholog 2 retrogenes
retro_mmur_1439, retro_mmur_863,
Macaca mulatta ENSMMUG00000014809 ortholog_one2one 4 retrogenes
retro_mmul_1112, retro_mmul_205, retro_mmul_468, retro_mmul_503,
Mustela putorius furo ENSMPUG00000000164 possible_ortholog 2 retrogenes
retro_mputfur_231, retro_mputfur_241,
Mus musculus ENSMUSG00000060373 ortholog_one2one 1 retrogene
retro_mmus_1388,
Nomascus leucogenys ENSNLEG00000014362 ortholog_one2one 2 retrogenes
retro_nleu_1828, retro_nleu_59,
Oryctolagus cuniculus ENSOCUG00000015029 possible_ortholog 1 retrogene
retro_ocun_138,
Otolemur garnettii ENSOGAG00000012543 ortholog_one2many 1 retrogene
retro_ogar_165,
Pan troglodytes ENSPTRG00000006118 ortholog_one2one 2 retrogenes
retro_ptro_1089, retro_ptro_2539,
Rattus norvegicus ENSRNOG00000011621 ortholog_one2many 1 retrogene
retro_rnor_922,
Tupaia belangeri ENSTBEG00000011514 possible_ortholog 11 retrogenes
retro_tbel_1738, retro_tbel_2114, retro_tbel_2475, retro_tbel_2838, retro_tbel_2849, retro_tbel_3094, retro_tbel_3293, retro_tbel_3776, retro_tbel_3903, retro_tbel_3937, retro_tbel_818,
Tarsius syrichta ENSTSYG00000003305 ortholog_one2one 3 retrogenes
retro_tsyr_1004, retro_tsyr_1326, retro_tsyr_1411,
Tursiops truncatus ENSTTRG00000016055 ortholog_one2many 2 retrogenes
retro_ttru_1299, retro_ttru_1490,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_2 89.42 100.00
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2. retro_pabe_722 83.54 53.92
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3. retro_pabe_780 91.37 66.55
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4. retro_pabe_1116 74.49 62.75
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5. retro_pabe_1263 84.07 100.00
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6. retro_pabe_1342 84.33 97.06
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Download FASTA sequences of all ENSPPYG00000005593 retrocopies