Parental gene: | SDHD, ENSPPYG00000003876 |
| Aliases: | None |
| Description: | Succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q5RC29] |
| Organism: | Orangutan (Pongo abelii) |
| Coordinates: | 11:108829848..108837912(+) |
>ENSPPYG00000003876
ATGGCGGTTCTCTGGAGGCTGAGTGCCGTTTGCGGTGCCCAAGGAGGCCGAGCTCTGTTGCTGCGAACCCCAGTGGTCAG
ACCTGCTCATATCTCAGCATTTCTTCAGGACCGACCTATCCCAGAATGGTGTGGAGTGCAGCACATACACTTGTCACCGG
GCCACCATTCTGGCTCCAAGGCTGCATCTCTCCACTGGACTAGCGAGAGGGTTGTCAGTGTTTTGCTCCTGGGTCTGCTT
CCGGCTGCTTATTTGAATCCTTGCTCTGCGATGGACTATTCCCTGGCTGCAACCCTCACTCTTCATGGTCACTGGGGCCT
TGGACAAGTTGTTACTGACTATGTTCATGGGGATGCCTCGCAGAAAGCTGCCAAGGCAGGGCTTTTGGCACTTTCAGCTT
TAACCTTTGCTGGGCTTTGCTATTTCAACTATCACGATGTGGGCATCTGCAAAGCTGTTGCCATGCTGTGGAAGCTCTGA
ATGGCGGTTCTCTGGAGGCTGAGTGCCGTTTGCGGTGCCCAAGGAGGCCGAGCTCTGTTGCTGCGAACCCCAGTGGTCAG
ACCTGCTCATATCTCAGCATTTCTTCAGGACCGACCTATCCCAGAATGGTGTGGAGTGCAGCACATACACTTGTCACCGG
GCCACCATTCTGGCTCCAAGGCTGCATCTCTCCACTGGACTAGCGAGAGGGTTGTCAGTGTTTTGCTCCTGGGTCTGCTT
CCGGCTGCTTATTTGAATCCTTGCTCTGCGATGGACTATTCCCTGGCTGCAACCCTCACTCTTCATGGTCACTGGGGCCT
TGGACAAGTTGTTACTGACTATGTTCATGGGGATGCCTCGCAGAAAGCTGCCAAGGCAGGGCTTTTGGCACTTTCAGCTT
TAACCTTTGCTGGGCTTTGCTATTTCAACTATCACGATGTGGGCATCTGCAAAGCTGTTGCCATGCTGTGGAAGCTCTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 8 .46 RPM |
| SRP007412_cerebellum | 5 .23 RPM |
| SRP007412_heart | 23 .00 RPM |
| SRP007412_kidney | 24 .73 RPM |
| SRP007412_liver | 22 .58 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Callithrix jacchus | ENSCJAG00000010975 | ortholog_one2one | 4 retrogenes | |
| Echinops telfairi | ENSETEG00000008424 | ortholog_one2one | 1 retrogene | |
| Homo sapiens | ENSG00000204370 | ortholog_one2one | 8 retrogenes | |
| Gorilla gorilla | ENSGGOG00000026496 | possible_ortholog | 1 retrogene | |
| Loxodonta africana | ENSLAFG00000002763 | ortholog_one2one | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000015247 | ortholog_one2many | 1 retrogene | |
| Otolemur garnettii | ENSOGAG00000008568 | ortholog_one2one | 5 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_pabe_1549 | 79.49 | 72.33 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_pabe_1924 | 73.64 | 80.50 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_pabe_2233 | 79.50 | 99.37 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_pabe_2999 | 95.00 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_pabe_3096 | 93.04 | 99.37 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSPPYG00000003876 retrocopies