Parental gene: | SDHD, ENSCJAG00000010975 |
| Aliases: | None |
| Description: | succinate dehydrogenase complex, subunit D, integral membrane protein [Source:HGNC Symbol;Acc:10683] |
| Organism: | Marmoset (Callithrix jacchus) |
| Coordinates: | 11:9598250..9606393(+) |
>ENSCJAG00000010975
ATGGCGGTTCTCTGGAGACTGAGTGCTCTTTGCTGTGCCCAAGGAGGCCGAGCTCTGTTGCTGCGAACTTCAGTGGTCAG
ACCTGCTCATATTTCAGCATTTCTTCAGAACCAACCTACCCCAGAATGGTGTGGAATGCAGCACATTCACTTGTCACCGA
GTCACCATTCTGGTTCCAAGACTGCATCTCTCCACTGGACTAGTGAGAGGGTTGTCAGTGTTTTGCTTCTGGGTCTGCTT
CCGGCTGCTTATTTGAATCCTTGCTCTGCGATGGACTATTCTCTGGCTGCAACTCTCACTCTTCATGGTCACTGGGGCCT
TGGACAAGTTGTTACTGACTATGTTCATGGGGATGCCTCGCAGAAAGCTGCCAAGGCAGGGCTTTTGGCCCTTTCAGCTT
TAACCTTTGCTGGGCTTTGCTATTTCAACTATCACGATGTGGGCATCTGCAAAGCTGTTGCCATGCTGTGGAAGCTC
ATGGCGGTTCTCTGGAGACTGAGTGCTCTTTGCTGTGCCCAAGGAGGCCGAGCTCTGTTGCTGCGAACTTCAGTGGTCAG
ACCTGCTCATATTTCAGCATTTCTTCAGAACCAACCTACCCCAGAATGGTGTGGAATGCAGCACATTCACTTGTCACCGA
GTCACCATTCTGGTTCCAAGACTGCATCTCTCCACTGGACTAGTGAGAGGGTTGTCAGTGTTTTGCTTCTGGGTCTGCTT
CCGGCTGCTTATTTGAATCCTTGCTCTGCGATGGACTATTCTCTGGCTGCAACTCTCACTCTTCATGGTCACTGGGGCCT
TGGACAAGTTGTTACTGACTATGTTCATGGGGATGCCTCGCAGAAAGCTGCCAAGGCAGGGCTTTTGGCCCTTTCAGCTT
TAACCTTTGCTGGGCTTTGCTATTTCAACTATCACGATGTGGGCATCTGCAAAGCTGTTGCCATGCTGTGGAAGCTC
| Library | Parental gene expression (RPM) |
|---|---|
| SRP051959_spleen | 13 .19 RPM |
| SRP051959_skeletal_muscle | 46 .32 RPM |
| SRP051959_lymph_node | 6 .42 RPM |
| SRP051959_lung | 7 .89 RPM |
| SRP051959_liver | 33 .01 RPM |
| SRP051959_kidney | 28 .04 RPM |
| SRP051959_heart | 24 .66 RPM |
| SRP051959_colon | 14 .27 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Echinops telfairi | ENSETEG00000008424 | ortholog_one2one | 1 retrogene | |
| Homo sapiens | ENSG00000204370 | ortholog_one2one | 8 retrogenes | |
| Gorilla gorilla | ENSGGOG00000026496 | possible_ortholog | 1 retrogene | |
| Loxodonta africana | ENSLAFG00000002763 | ortholog_one2one | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000015247 | ortholog_one2many | 1 retrogene | |
| Otolemur garnettii | ENSOGAG00000008568 | ortholog_one2one | 5 retrogenes | |
| Pongo abelii | ENSPPYG00000003876 | ortholog_one2one | 5 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cjac_1385 | 72.05 | 99.37 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cjac_1390 | 93.08 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_cjac_1557 | 81.06 | 81.13 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_cjac_3829 | 86.96 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCJAG00000010975 retrocopies