Parental gene:

HNRNPDL, ENSOPRG00000007178

Aliases:None
Description:heterogeneous nuclear ribonucleoprotein D-like [Source:HGNC Symbol;Acc:5037]
Organism:Southern American pika (Ochotona princeps)
Coordinates:scaffold_1717:55274..57404(-)


>ENSOPRG00000007178
AAAATGTTTATTGGAGGCTTGAGCTGGGATACGAGCAAGAAAGATCTGACAGAATATTTGTCTCGATTTGGGGAAGTTGT
AGACTGTACAATTAAGACAGACCCGGTCACTGGAAGATCAAGAGGATTTGGATTTGTGCTTTTCAAAGACGCTGCTAGTG
TGGATAAGGTTTTGGAACTAAAAGAACACAAACTGGATGGTAAATTGATAGACCCAAAAAGAGCCAAAGCTCTAAAAGGG
AAAGAACCTCCTAAGAAGGTCTTTGTAGGTGGATTGAGCCCAGACACTTCGGAAGAGCAAATTAAAGAATATTTTGGAGC
CTTTGGAGAGATTGAAAATATTGAACTTCCCATGGATACAAAAACAAATGAAAGAAGAGGATTCTGTTTTATCACATACA
CAGATGAAGAACCAGTAAAGAAATTGTTGGAAAGCAGATACCATCAAATTGGTTCTGGGAAGTGTGAAATCAAAGTGGCA
CAACCCAAAGAAGTCTATAGGCAGCAGCAGCAGCAACAAAAAGGAGGAAGAGGTGCTGCAGCCGCTGGCCGAGGAGGTGT
GCGGGGGCGTGGCCGAGGTCAGGGCCAAAACTGGAACCAAGGATTTAATAACTATTATGATCAAGGATATGGAAATTACA
ATAGTGCCTATGGTGGTGATCAAAACTATAGTGGCTATGGCGGATATGATTATACTGGGTATAACTATGGGAACTATGGA
TATGGACAGGGATATACAGACTACAGTGGCCAGCAGAGCACTTACGGCAAGGCATCTCGAGGGGGTGGCAATCACCAAAA
CAATTACCAGCCGTACTAA

Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000014804 ortholog_one2one 2 retrogenes
retro_btau_1827, retro_btau_461,
Choloepus hoffmanni ENSCHOG00000000160 possible_ortholog 8 retrogenes
retro_chof_115, retro_chof_1470, retro_chof_2108, retro_chof_2370, retro_chof_533, retro_chof_59, retro_chof_741, retro_chof_890,
Choloepus hoffmanni ENSCHOG00000003275 possible_ortholog 2 retrogenes
retro_chof_1578, retro_chof_18,
Cavia porcellus ENSCPOG00000015619 ortholog_one2one 5 retrogenes
retro_cpor_1110, retro_cpor_1318, retro_cpor_264, retro_cpor_274, retro_cpor_567,
Equus caballus ENSECAG00000022692 ortholog_one2one 1 retrogene
retro_ecab_1082,
Microcebus murinus ENSMICG00000001445 ortholog_one2one 4 retrogenes
retro_mmur_1016, retro_mmur_1570, retro_mmur_1572, retro_mmur_557,
Myotis lucifugus ENSMLUG00000014452 ortholog_one2one 2 retrogenes
retro_mluc_1140, retro_mluc_1761,
Mustela putorius furo ENSMPUG00000014753 ortholog_one2one 2 retrogenes
retro_mputfur_1359, retro_mputfur_600,
Oryctolagus cuniculus ENSOCUG00000013805 ortholog_one2one 1 retrogene
retro_ocun_505,
Otolemur garnettii ENSOGAG00000002501 possible_ortholog 4 retrogenes
retro_ogar_2717, retro_ogar_2791, retro_ogar_437, retro_ogar_693,
Ochotona princeps ENSOPRG00000006107 other_paralog 10 retrogenes
retro_opri_1183, retro_opri_338, retro_opri_349, retro_opri_424, retro_opri_456, retro_opri_597, retro_opri_753, retro_opri_782, retro_opri_79, retro_opri_843,
Ochotona princeps ENSOPRG00000011698 within_species_paralog 2 retrogenes
retro_opri_165, retro_opri_893,
Procavia capensis ENSPCAG00000011543 ortholog_one2one 1 retrogene
retro_pcap_366,
Rattus norvegicus ENSRNOG00000002270 ortholog_one2one 1 retrogene
retro_rnor_1365,
Sorex araneus ENSSARG00000009961 ortholog_one2one 1 retrogene
retro_sara_421,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_opri_623 54.44 60.66
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2. retro_opri_703 69.91 77.94
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3. retro_opri_1075 64.67 61.40
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Download FASTA sequences of all ENSOPRG00000007178 retrocopies