Parental gene: | COX6A1, ENSOCUG00000009873 |
| Aliases: | COX6A1, COX6A |
| Description: | cytochrome c oxidase subunit VIa (COX6A1), nuclear gene encoding mitochondrial protein, mRNA [Source:RefSeq mRNA;Acc:NM_001170883] |
| Organism: | Rabbit (Oryctolagus cuniculus) |
| Coordinates: | 21:12132326..12134925(-) |
>ENSOCUG00000009873
AAAATGGCGGCGGCAGCTTGGTCCAGGGTTTCTCGGCTTCTAGGTCGGTCCCGCCTCCAGGTGGGGCGGCCTATGTCGAG
CGGCGCGCACGGCGAGGAGGGCTCAGCTCGCATGTGGAAGGCCCTCACCTACTTCGTCGCGCTCCCCGGCGTGGGCGTGA
GCATGCTGAATGTCTACCTGAAGTCGCACCACGAAGAGCACGAGAGACCCGAGTTCATCGCCTACCCCCATCTCCGCATC
AGGTCCAAGCCCTTTCCCTGGGGAGATGGGAACCATACTCTGTTCCATAACCCTCATGTGAATCCACTTCCAACTGGCTA
CGAAGATGAATGA
AAAATGGCGGCGGCAGCTTGGTCCAGGGTTTCTCGGCTTCTAGGTCGGTCCCGCCTCCAGGTGGGGCGGCCTATGTCGAG
CGGCGCGCACGGCGAGGAGGGCTCAGCTCGCATGTGGAAGGCCCTCACCTACTTCGTCGCGCTCCCCGGCGTGGGCGTGA
GCATGCTGAATGTCTACCTGAAGTCGCACCACGAAGAGCACGAGAGACCCGAGTTCATCGCCTACCCCCATCTCCGCATC
AGGTCCAAGCCCTTTCCCTGGGGAGATGGGAACCATACTCTGTTCCATAACCCTCATGTGAATCCACTTCCAACTGGCTA
CGAAGATGAATGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_liver | 50 .02 RPM |
| SRP017611_kidney | 242 .44 RPM |
| SRP017611_brain | 201 .88 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Bos taurus | ENSBTAG00000012788 | ortholog_many2many | 1 retrogene | |
| Canis familiaris | ENSCAFG00000031458 | ortholog_many2many | 1 retrogene | |
| Choloepus hoffmanni | ENSCHOG00000009222 | ortholog_many2many | 2 retrogenes | |
| Callithrix jacchus | ENSCJAG00000001174 | ortholog_many2many | 6 retrogenes | |
| Cavia porcellus | ENSCPOG00000006426 | ortholog_one2many | 1 retrogene | |
| Equus caballus | ENSECAG00000012512 | ortholog_one2many | 2 retrogenes | |
| Echinops telfairi | ENSETEG00000016826 | ortholog_one2many | 1 retrogene | |
| Felis catus | ENSFCAG00000031188 | ortholog_one2many | 9 retrogenes | |
| Homo sapiens | ENSG00000111775 | ortholog_many2many | 1 retrogene | |
| Gorilla gorilla | ENSGGOG00000014101 | ortholog_many2many | 2 retrogenes | |
| Myotis lucifugus | ENSMLUG00000010330 | ortholog_one2many | 4 retrogenes | |
| Macaca mulatta | ENSMMUG00000016000 | ortholog_many2many | 2 retrogenes | |
| Nomascus leucogenys | ENSNLEG00000015644 | ortholog_one2many | 4 retrogenes | |
| Otolemur garnettii | ENSOGAG00000003561 | ortholog_many2many | 18 retrogenes | |
| Pongo abelii | ENSPPYG00000005028 | ortholog_one2many | 4 retrogenes | |
| Pan troglodytes | ENSPTRG00000005532 | ortholog_many2many | 3 retrogenes | |
| Pteropus vampyrus | ENSPVAG00000002226 | ortholog_one2many | 3 retrogenes | |
| Rattus norvegicus | ENSRNOG00000001170 | ortholog_one2many | 2 retrogenes | |
| Tupaia belangeri | ENSTBEG00000008018 | ortholog_one2many | 4 retrogenes | |
| Tarsius syrichta | ENSTSYG00000011541 | ortholog_one2many | 1 retrogene | |
| Tursiops truncatus | ENSTTRG00000000142 | ortholog_one2many | 2 retrogenes | |
| Vicugna pacos | ENSVPAG00000010359 | ortholog_one2many | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_ocun_174 | 70.64 | 99.09 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_ocun_1320 | 83.64 | 99.09 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_ocun_1668 | 74.31 | 99.09 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_ocun_1700 | 71.82 | 99.09 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_ocun_1898 | 86.49 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 6. | retro_ocun_1928 | 64.22 | 97.27 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSOCUG00000009873 retrocopies