Parental gene:

Fam133b, ENSMUSG00000058503

Aliases:None
Description:family with sequence similarity 133, member B [Source:MGI Symbol;Acc:MGI:1915402]
Organism:Mouse (Mus musculus)
Coordinates:5:3543843..3569810(+)


>ENSMUSG00000058503
ATGGGGAAACGGGATAATCGCGTGGCCTACATGAATCCAATAGCAATGGCTCGATCAAGGGGTCCAATCCAGTCTTCAGG
ACCAACAATCCAGGATTATCTGAATCGACCAAGGCCTACCTGGGAGGAAGTCAAGGAACAGCTGGAAAAGAAAAAGAAGG
GCTCCAAGGCTTTGGCTGAGTTTGAAGAAAAAATGAATGAGAATTGGAAGAAAGAACTAGAAAAACATAGAGAAAAATTA
TTAAGTGGAAATGAGAGCTCATCCAAAAAAAGACAGAAAAAGAAAAAAGAAAAGAAGAAATCTGGTAGGTATTCATCTTC
TTCTTCATCGAGCTCTGATTCTTCCAGCAGTTCTTCAGATTCCGAAGATGAGGATAAAAAACAAACAAAAAGAAGGAAGA
AAAAGAAGAGCCGTTGCCATAAGTCTCCTGAGAGCTCGGGGTCGGATTCGGCTTCAGACAGCAAGGATGGTTCAAAAAAG
AAAAAGAAGTCCAAGGATGTAACTGAAAGAGAAAAGGACACTAAAGGTCTCAGCAAAAAGAGAAAGATGTACGAAGATAA
ACCGTTGTCATCTGAGTCGCTGTCAGAGTCAGACTGTGGAGAGGTGCAAGCAAAAAGGAAGAAAAGCGGTGAAGAGCGTG
AGAGAACAACAGACAAAGCCAAAAAGAGAAGGAAGCATAAGAAGCACAGCAAGAAGAAGAAAAAGAAGGCCGCCAGCTCC
AGCTCAGACTCGCCGTAG

Library Parental gene expression (RPM)
SRP007412_brain 16 .40 RPM
SRP007412_cerebellum 27 .31 RPM
SRP007412_heart 6 .35 RPM
SRP007412_kidney 17 .11 RPM
SRP007412_liver 6 .88 RPM
SRP007412_testis 28 .63 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000007438 ortholog_one2one 1 retrogene
retro_amel_102,
Callithrix jacchus ENSCJAG00000013910 ortholog_one2one 3 retrogenes
retro_cjac_1084, retro_cjac_1163, retro_cjac_4095,
Equus caballus ENSECAG00000026810 ortholog_one2one 1 retrogene
retro_ecab_95,
Homo sapiens ENSG00000234545 ortholog_one2one 4 retrogenes
retro_hsap_2336, retro_hsap_3179, retro_hsap_55, retro_hsap_577,
Loxodonta africana ENSLAFG00000029755 ortholog_one2one 1 retrogene
retro_lafr_594,
Myotis lucifugus ENSMLUG00000005933 ortholog_one2one 1 retrogene
retro_mluc_2301,
Macaca mulatta ENSMMUG00000019802 ortholog_one2one 4 retrogenes
retro_mmul_1415, retro_mmul_226, retro_mmul_420, retro_mmul_765,
Nomascus leucogenys ENSNLEG00000015333 ortholog_one2many 1 retrogene
retro_nleu_14,
Pongo abelii ENSPPYG00000025825 ortholog_one2many 1 retrogene
retro_pabe_225,
Rattus norvegicus ENSRNOG00000009163 ortholog_one2one 1 retrogene
retro_rnor_2891,
Sus scrofa ENSSSCG00000015317 ortholog_one2one 1 retrogene
retro_sscr_49,
Ictidomys tridecemlineatus ENSSTOG00000028195 ortholog_one2one 1 retrogene
retro_itri_12,
Tupaia belangeri ENSTBEG00000011674 ortholog_one2one 1 retrogene
retro_tbel_1,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mmus_3481 93.01 58.37
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2. retro_mmus_3519 50.74 55.51
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Download FASTA sequences of all ENSMUSG00000058503 retrocopies