Parental gene:

Epcam, ENSMUSG00000045394

Aliases:Epcam, CD326, EGP, EGP-2, Egp314, Ep-CAM, EpCAM1, GA733-2, Ly74, TROP1, Tacsd1, Tacstd1, gp40
Description:epithelial cell adhesion molecule [Source:MGI Symbol;Acc:MGI:106653]
Organism:Mouse (Mus musculus)
Coordinates:17:87635978..87651106(+)


>ENSMUSG00000045394
ATGGCGGGTCCCCAGGCCCTCGCGTTCGGGCTCCTGCTCGCGGTGGTCACAGCGACGCTGGCCGCGGCTCAGAGAGACTG
TGTCTGTGACAACTACAAGCTGGCAACAAGTTGCTCTCTGAATGAATATGGTGAATGCCAGTGTACTTCCTATGGTACAC
AGAATACTGTCATTTGCTCCAAACTGGCGTCTAAATGCTTGGCGATGAAAGCAGAAATGACTCACAGCAAGTCTGGGAGG
AGGATAAAGCCCGAAGGGGCGATCCAGAACAACGATGGGCTGTACGACCCCGACTGCGACGAGCAGGGGCTCTTCAAAGC
CAAGCAGTGCAACGGCACCGCCACGTGCTGGTGTGTCAACACCGCCGGAGTCCGAAGAACCGACAAGGACACGGAGATCA
CGTGCTCCGAGCGCGTGAGGACCTACTGGATCATCATTGAACTAAAACACAAAGAAAGAGAAAGCCCCTACGACCATCAG
AGCTTGCAGACTGCGCTTCAAGAGGCGTTCACATCTCGATATAAGCTGAATCAGAAATTTATCAAAAACATTATGTATGA
GAATAATGTTATCACCATTGATCTGATGCAAAACTCTTCTCAGAAAACACAAGACGACGTGGACATAGCTGATGTGGCTT
ACTATTTTGAAAAAGATGTGAAGGGGGAGTCCCTGTTCCATTCTTCTAAGAGCATGGACCTGAGAGTGAACGGAGAGCCG
CTCGATCTGGACCCCGGGCAGACTCTGATTTACTACGTTGATGAAAAGGCACCCGAGTTCTCCATGCAGGGCCTCACGGC
CGGGATCATCGCTGTCATTGTGGTGGTGTCATTAGCAGTCATCGCGGGGATTGTTGTCCTGGTTATATCTACAAGGAAGA
AATCAGCAAAATATGAGAAGGCTGAGATAAAGGAGATGGGTGAGATCCACAGAGAGCTTAATGCCTAG

Library Parental gene expression (RPM)
SRP007412_brain 0 .14 RPM
SRP007412_cerebellum 0 .09 RPM
SRP007412_heart 0 .09 RPM
SRP007412_kidney 70 .53 RPM
SRP007412_liver 1 .69 RPM
SRP007412_testis 24 .20 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000006474 ortholog_one2one 1 retrogene
retro_btau_66,
Choloepus hoffmanni ENSCHOG00000013834 ortholog_one2one 1 retrogene
retro_chof_258,
Callithrix jacchus ENSCJAG00000000624 ortholog_one2one 1 retrogene
retro_cjac_3006,
Dasypus novemcinctus ENSDNOG00000011799 ortholog_one2one 1 retrogene
retro_dnov_345,
Erinaceus europaeus ENSEEUG00000009462 ortholog_one2one 1 retrogene
retro_eeur_151,
Macropus eugenii ENSMEUG00000015074 ortholog_one2one 2 retrogenes
retro_meug_1984, retro_meug_474,
Microcebus murinus ENSMICG00000000151 ortholog_one2one 1 retrogene
retro_mmur_739,
Macaca mulatta ENSMMUG00000012390 ortholog_one2one 1 retrogene
retro_mmul_34,
Monodelphis domestica ENSMODG00000001077 ortholog_one2one 1 retrogene
retro_mdom_104,
Ochotona princeps ENSOPRG00000004301 ortholog_one2one 1 retrogene
retro_opri_1225,
Pelodiscus sinensis ENSPSIG00000015680 ortholog_one2one 1 retrogene
retro_psin_22,
Pan troglodytes ENSPTRG00000011902 ortholog_one2one 1 retrogene
retro_ptro_92,
Rattus norvegicus ENSRNOG00000015667 ortholog_one2one 1 retrogene
retro_rnor_252,
Sus scrofa ENSSSCG00000008429 ortholog_one2one 1 retrogene
retro_sscr_69,
Ictidomys tridecemlineatus ENSSTOG00000008631 ortholog_one2one 1 retrogene
retro_itri_106,
Tursiops truncatus ENSTTRG00000004235 ortholog_one2one 2 retrogenes
retro_ttru_21, retro_ttru_394,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mmus_185 51.80 95.87
Please wait, loading
Please wait, loading
Please wait, loading
Download FASTA sequences of all ENSMUSG00000045394 retrocopies