Parental gene:

Gar1, ENSMUSG00000028010

Aliases:Gar1, AA409823, AI326794, C430047J18Rik, Nola1
Description:GAR1 ribonucleoprotein homolog (yeast) [Source:MGI Symbol;Acc:MGI:1930948]
Organism:Mouse (Mus musculus)
Coordinates:3:129824911..129831396(-)


>ENSMUSG00000028010
ATGTCTTTCCGAGGCGGAGGTCGCGGAGGCTTTAATCGCGGTGGTGGAGGCGGAGGCTTCAACCGTGGCGGCGGCAGCAA
CAACCACTTCCGAGGGGGCGGCGGAGGCGGCGGCGGCAGTTTCAGGGGCGGAGGCGGCGGCGGCGGCGGCAGTTTCAGGG
GCGGCGGCCGAGGAGGATTTGGACGAGGGGGCGGTCGTGGAGGCTTTAATAAATTTCAAGATCAAGGGCCTCCAGAACGT
GTCGTCTTGTTAGGAGAATTCATGCATCCCTGTGAAGATGACATCGTGTGTAAATGTACCACCGAGGAGAACAAGGTGCC
CTACTTCAACGCCCCTGTTTACTTAGAAAACAAAGAGCAAGTCGGGAAAGTGGATGAGATATTTGGACAGCTTAGAGATT
TTTATTTTTCAGTTAAGTTGTCAGAAAACATGAAGGCATCTTCCTTTAAAAAGCTACAGAAGTTCTATATAGACCCATAC
AAGCTGCTGCCGCTGCAGAGGTTTCTGCCTCGTCCTCCTGGTGAGAAAGGACCTCCCAGAGGTGGCGGCGGTGGCGGCAG
GGGAGGTCGAGGAGGAGGAAGAGGAGGCGGTGGCCGAGGTGGTGGAAGAGGTGGTGGTTTTAGAGGAGGCAGAGGAGGAG
GTGGGGGCTTCAGAGGAGGAAGAGGAGGTGGCGGATTCCGAGGAAGGGGACATTAG

Library Parental gene expression (RPM)
SRP007412_brain 9 .63 RPM
SRP007412_cerebellum 12 .94 RPM
SRP007412_heart 9 .09 RPM
SRP007412_kidney 13 .38 RPM
SRP007412_liver 8 .30 RPM
SRP007412_testis 33 .48 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000004605 ortholog_one2one 2 retrogenes
retro_amel_1932, retro_amel_682,
Homo sapiens ENSG00000109534 ortholog_one2one 1 retrogene
retro_hsap_3130,
Gorilla gorilla ENSGGOG00000008681 ortholog_one2one 1 retrogene
retro_ggor_2144,
Myotis lucifugus ENSMLUG00000003776 ortholog_one2one 1 retrogene
retro_mluc_1866,
Macaca mulatta ENSMMUG00000021225 ortholog_one2one 1 retrogene
retro_mmul_1992,
Mustela putorius furo ENSMPUG00000008615 ortholog_one2one 2 retrogenes
retro_mputfur_1491, retro_mputfur_689,
Nomascus leucogenys ENSNLEG00000016578 ortholog_one2one 1 retrogene
retro_nleu_2251,
Oryctolagus cuniculus ENSOCUG00000003901 ortholog_one2one 1 retrogene
retro_ocun_414,
Otolemur garnettii ENSOGAG00000004693 ortholog_one2one 1 retrogene
retro_ogar_1017,
Ochotona princeps ENSOPRG00000012089 ortholog_one2one 1 retrogene
retro_opri_1168,
Pongo abelii ENSPPYG00000014996 ortholog_one2one 1 retrogene
retro_pabe_2586,
Pan troglodytes ENSPTRG00000016364 ortholog_one2one 1 retrogene
retro_ptro_2119,
Tarsius syrichta ENSTSYG00000013668 ortholog_one2one 2 retrogenes
retro_tsyr_355, retro_tsyr_613,
Tursiops truncatus ENSTTRG00000016318 ortholog_one2one 1 retrogene
retro_ttru_1539,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mmus_2012 85.38 55.84
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Download FASTA sequences of all ENSMUSG00000028010 retrocopies