Parental gene:

Psma6, ENSMUSG00000021024

Aliases:Psma6, IOTA
Description:proteasome (prosome, macropain) subunit, alpha type 6 [Source:MGI Symbol;Acc:MGI:1347006]
Organism:Mouse (Mus musculus)
Coordinates:12:55384221..55418454(+)


>ENSMUSG00000021024
ATGTCCCGGGGTTCCAGCGCCGGTTTTGACCGTCACATTACTATCTTCTCTCCCGAGGGCCGACTCTACCAAGTAGAATA
TGCTTTTAAGGCTATTAACCAGGGTGGACTTACATCTGTTGCTGTCAGAGGAAAGGACTGTGCAGTTATTGTCACACAGA
AGAAAGTACCCGACAAACTACTGGATTCCAGCACAGTGACTCACTTGTTCAAGATAACGGAAAGCATTGGCTGTGTGATG
ACAGGAATGACAGCTGACAGCAGATCCCAGGTACAGAGGGCACGCTATGAGGCAGCTAATTGGAAATACAAGTATGGCTA
TGAAATTCCTGTGGACATGCTGTGCAAAAGAATTGCTGATATTTCTCAAGTCTACACACAGAACGCTGAAATGAGGCCAC
TCGGTTGTTGTATGATTTTAATCGGTATCGATGAAGAGCAAGGCCCTCAAGTGTACAAGTGTGATCCTGCAGGTTACTAC
TGTGGCTTTAAAGCCACGGCGGCAGGAGTTAAACAAACAGAGTCAACCAGCTTCCTTGAAAAGAAAGTGAAGAAGAAATT
TGATTGGACATTTGAACAGACAGTGGAAACTGCAATTACATGCCTGTCTACTGTTCTGTCGATTGACTTCAAACCTTCAG
AAATAGAAGTTGGAGTAGTTACAGTTGAAAATCCTAAATTCAGGATTCTTACTGAAGCAGAGATTGACGCTCACCTTGTT
GCTCTAGCAGAGAGAGACTGA

Library Parental gene expression (RPM)
SRP007412_brain 59 .53 RPM
SRP007412_cerebellum 48 .55 RPM
SRP007412_heart 60 .92 RPM
SRP007412_kidney 65 .83 RPM
SRP007412_liver 69 .09 RPM
SRP007412_testis 304 .99 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000013409 ortholog_one2one 2 retrogenes
retro_cfam_1581, retro_cfam_743,
Echinops telfairi ENSETEG00000004892 ortholog_one2one 1 retrogene
retro_etel_1775,
Felis catus ENSFCAG00000026276 ortholog_one2one 1 retrogene
retro_fcat_973,
Homo sapiens ENSG00000100902 ortholog_one2one 2 retrogenes
retro_hsap_1228, retro_hsap_4923,
Macropus eugenii ENSMEUG00000016537 ortholog_one2one 1 retrogene
retro_meug_1217,
Microcebus murinus ENSMICG00000000083 ortholog_one2one 4 retrogenes
retro_mmur_104, retro_mmur_165, retro_mmur_752, retro_mmur_80,
Myotis lucifugus ENSMLUG00000010228 ortholog_one2one 1 retrogene
retro_mluc_822,
Macaca mulatta ENSMMUG00000016544 ortholog_one2many 1 retrogene
retro_mmul_343,
Mustela putorius furo ENSMPUG00000016288 ortholog_one2one 1 retrogene
retro_mputfur_1089,
Otolemur garnettii ENSOGAG00000008492 ortholog_one2one 10 retrogenes
retro_ogar_1273, retro_ogar_1397, retro_ogar_1928, retro_ogar_1950, retro_ogar_2021, retro_ogar_2073, retro_ogar_2274, retro_ogar_2488, retro_ogar_2521, retro_ogar_3089,
Pan troglodytes ENSPTRG00000006264 ortholog_one2one 2 retrogenes
retro_ptro_3297, retro_ptro_844,
Rattus norvegicus ENSRNOG00000007114 ortholog_one2one 4 retrogenes
retro_rnor_1724, retro_rnor_1960, retro_rnor_854, retro_rnor_924,
Tupaia belangeri ENSTBEG00000011241 ortholog_one2one 17 retrogenes
retro_tbel_1304, retro_tbel_1415, retro_tbel_1789, retro_tbel_2028, retro_tbel_2466, retro_tbel_2519, retro_tbel_3227, retro_tbel_3280, retro_tbel_3535, retro_tbel_4181, retro_tbel_4183, retro_tbel_4357, retro_tbel_4465, retro_tbel_4495, retro_tbel_509, retro_tbel_602, retro_tbel_725,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mmus_654 74.76 82.11
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Download FASTA sequences of all ENSMUSG00000021024 retrocopies