Parental gene: | UBFD1, ENSMODG00000006727 |
| Aliases: | None |
| Description: | ubiquitin family domain containing 1 [Source:HGNC Symbol;Acc:30565] |
| Organism: | Opossum (Monodelphis domestica) |
| Coordinates: | 6:120357377..120372267(-) |
>ENSMODG00000006727
ATGGCGGCGGCCGGAGCCCCGGATGAAGTCGAGGAGCCCGGCATGGAAACAGATGCCCAGAAACTGCAGCTCAACTGCGT
GGACGCCGAGGCTGAGACCTCCTCCTGCACCTCCTCCTCGTCCTCGGCCCCGGCGGACAAGGGCAGCCTGCAAACAGACC
AGCCTCAGGAGAACATAGCCACTGCCCAGGCCTCGGTCAGCAACGGCGACGACGCGGAAACCGAGAAGGAGCTGGTGGAT
CTAAAGATCATCTGGAACAAAAACAAATACGACGTTCGGGTGCCTCTGGACAGCTCGGGAGCGGAGCTGAAGCGCAGGAT
CCACTCCATTACAGGACTACCACCTGCCATGCAGAAAGTTATGTTTAAGGGACTTCTACCTGAGGAGAAAACATTACGGG
AAATCAAAGTGACCAGTGGTGCCAAGATTATGGTGGTTGGATCTACAATAAATGATGTTTTAGCAGTAAATACACCCAAA
GATGCAGCACAGCAAGAAGCAAAAGCTGAAGAGAGTAAAAAGGAGCCACTTTGTAGGCAAAAGCAACACAGAAAAGTGTT
GGATAAAGGAAAACCTGAAGATGTGATGCCTTCTGTTAAGGGTGCTCAGGAACGACTGCCAACAGTACCTTTATCAGGCA
TGTACAATAAGACAGGAGGAAAAGTGAGACTCACCTTTAAACTAGAACAAGACCAATTGTGGATTGGCACTAAAGAGCGA
ACTGAAAAATTACCCATGGGCTCCATTAAAAATGTGGTCAGTGAACCTATTGAAGGACATGAAGATTACCACATGATGGC
ATTTCAGTTGGGTCCCACCGAAGCCTCTTACTACTGGGTGTATTGGGTTCCAACTCAGAATAAACTGGATGTACTTCTGT
TGGTAATCAAACTCTCCCAGCAACTGAGTGAGTCCAATTCAAGTCATCAAGGGAGACAAATGGGGCGAGAGCCATCTTTT
TGCCAGCTTTGA
ATGGCGGCGGCCGGAGCCCCGGATGAAGTCGAGGAGCCCGGCATGGAAACAGATGCCCAGAAACTGCAGCTCAACTGCGT
GGACGCCGAGGCTGAGACCTCCTCCTGCACCTCCTCCTCGTCCTCGGCCCCGGCGGACAAGGGCAGCCTGCAAACAGACC
AGCCTCAGGAGAACATAGCCACTGCCCAGGCCTCGGTCAGCAACGGCGACGACGCGGAAACCGAGAAGGAGCTGGTGGAT
CTAAAGATCATCTGGAACAAAAACAAATACGACGTTCGGGTGCCTCTGGACAGCTCGGGAGCGGAGCTGAAGCGCAGGAT
CCACTCCATTACAGGACTACCACCTGCCATGCAGAAAGTTATGTTTAAGGGACTTCTACCTGAGGAGAAAACATTACGGG
AAATCAAAGTGACCAGTGGTGCCAAGATTATGGTGGTTGGATCTACAATAAATGATGTTTTAGCAGTAAATACACCCAAA
GATGCAGCACAGCAAGAAGCAAAAGCTGAAGAGAGTAAAAAGGAGCCACTTTGTAGGCAAAAGCAACACAGAAAAGTGTT
GGATAAAGGAAAACCTGAAGATGTGATGCCTTCTGTTAAGGGTGCTCAGGAACGACTGCCAACAGTACCTTTATCAGGCA
TGTACAATAAGACAGGAGGAAAAGTGAGACTCACCTTTAAACTAGAACAAGACCAATTGTGGATTGGCACTAAAGAGCGA
ACTGAAAAATTACCCATGGGCTCCATTAAAAATGTGGTCAGTGAACCTATTGAAGGACATGAAGATTACCACATGATGGC
ATTTCAGTTGGGTCCCACCGAAGCCTCTTACTACTGGGTGTATTGGGTTCCAACTCAGAATAAACTGGATGTACTTCTGT
TGGTAATCAAACTCTCCCAGCAACTGAGTGAGTCCAATTCAAGTCATCAAGGGAGACAAATGGGGCGAGAGCCATCTTTT
TGCCAGCTTTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain | 0 .00 RPM |
| SRP007412_cerebellum | 0 .00 RPM |
| SRP007412_heart | 0 .00 RPM |
| SRP007412_kidney | 0 .00 RPM |
| SRP007412_liver | 0 .00 RPM |
| SRP007412_testis | 0 .00 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Anolis carolinensis | ENSACAG00000029331 | ortholog_one2one | 2 retrogenes | |
| Canis familiaris | ENSCAFG00000017670 | ortholog_one2one | 1 retrogene | |
| Callithrix jacchus | ENSCJAG00000020614 | ortholog_one2many | 1 retrogene | |
| Cavia porcellus | ENSCPOG00000006872 | ortholog_one2one | 2 retrogenes | |
| Oryctolagus cuniculus | ENSOCUG00000008444 | ortholog_one2one | 1 retrogene | |
| Pongo abelii | ENSPPYG00000007191 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_mdom_1162 | 75.37 | 82.35 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_mdom_1298 | 79.65 | 69.35 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSMODG00000006727 retrocopies