Parental gene:

MMU.4088, ENSMMUG00000013259

Aliases:None
Description:proliferating cell nuclear antigen [Source:RefSeq peptide;Acc:NP_001253019]
Organism:Rhesus macaque (Macaca mulatta)
Coordinates:10:38452889..38458126(-)


>ENSMMUG00000013259
ATGTTCGAGGCGCGCCTGGTCCAGGGCTCCATCCTGAAGAAGGTGTTGGAGGCCCTCAAGGACCTCATCAACGAGGCCTG
CTGGGATATTAGCTCCAGCGGCGTAAATCTGCAGAGCATGGACTCGTCCCACGTCTCCTTGGTGCAGCTCACCCTGCGGT
CTGAGGGCTTCGACACCTACCGCTGCGACCGCAACCTGGCTATGGGCGTAAACCTCACCAGTATGTCCAAAATACTAAAA
TGCGCCGGCAATGAAGATATCATTACACTAAGGGCTGAAGATAATGCGGATACCTTGGCGCTAGTATTTGAAGCACCCAA
CCAGGAGAAAGTTTCAGACTATGAAATGAAGTTGATGGATTTGGATGTTGAACAACTTGGAATTCCAGAACAAGAGTACA
GCTGTGTAGTAAAGATGCCTTCTGGTGAATTTGCACGTATATGCCGAGATCTCAGCCATATTGGAGATGCTGTTGTAATT
TCCTGTGCAAAAGACGGCGTGAAATTTTCTGCAAGTGGAGAACTTGGAAATGGAAACATTAAATTGTCACAGACAAGTAA
TGTCGATAAAGAGGAGGAAGCTGTTACCATAGAGATGAATGAACCAGTTCAACTAACTTTTGCACTGAGGTACCTGAACT
TCTTTACAAAAGCCACTCCACTCTCTTCAACGGTGACACTCAGTATGTCTGCAGATGTACCCCTTGTTGTAGAGTATAAA
ATTGCTGATATGGGACACTTGAAGTACTACTTGGCTCCCAAGATCGAGGATGAAGAAGGATCTTAG

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 10 .71 RPM
SRP007412_brain 10 .64 RPM
SRP007412_cerebellum 15 .56 RPM
SRP007412_heart 5 .54 RPM
SRP007412_kidney 16 .43 RPM
SRP007412_liver 10 .65 RPM
SRP007412_testis 41 .16 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000009089 ortholog_one2one 1 retrogene
retro_amel_1719,
Canis familiaris ENSCAFG00000006030 ortholog_one2one 2 retrogenes
retro_cfam_1626, retro_cfam_946,
Callithrix jacchus ENSCJAG00000021278 ortholog_one2one 3 retrogenes
retro_cjac_2159, retro_cjac_2175, retro_cjac_930,
Cavia porcellus ENSCPOG00000009242 ortholog_one2one 1 retrogene
retro_cpor_315,
Erinaceus europaeus ENSEEUG00000003069 ortholog_one2one 1 retrogene
retro_eeur_358,
Echinops telfairi ENSETEG00000006577 ortholog_one2many 3 retrogenes
retro_etel_1152, retro_etel_1539, retro_etel_2217,
Felis catus ENSFCAG00000009068 ortholog_one2one 2 retrogenes
retro_fcat_1363, retro_fcat_1729,
Homo sapiens ENSG00000132646 ortholog_one2one 3 retrogenes
retro_hsap_3067, retro_hsap_4817, retro_hsap_857,
Gorilla gorilla ENSGGOG00000001695 ortholog_one2one 2 retrogenes
retro_ggor_2107, retro_ggor_700,
Myotis lucifugus ENSMLUG00000001693 ortholog_one2one 1 retrogene
retro_mluc_1658,
Monodelphis domestica ENSMODG00000011649 ortholog_one2one 1 retrogene
retro_mdom_933,
Mustela putorius furo ENSMPUG00000006195 ortholog_one2one 2 retrogenes
retro_mputfur_330, retro_mputfur_629,
Mus musculus ENSMUSG00000027342 ortholog_one2many 1 retrogene
retro_mmus_114,
Nomascus leucogenys ENSNLEG00000007726 ortholog_one2one 2 retrogenes
retro_nleu_2192, retro_nleu_424,
Otolemur garnettii ENSOGAG00000033161 ortholog_one2one 2 retrogenes
retro_ogar_1258, retro_ogar_2960,
Procavia capensis ENSPCAG00000010500 ortholog_one2one 1 retrogene
retro_pcap_130,
Pongo abelii ENSPPYG00000010795 ortholog_one2one 3 retrogenes
retro_pabe_2542, retro_pabe_3745, retro_pabe_690,
Pan troglodytes ENSPTRG00000013222 ortholog_one2one 3 retrogenes
retro_ptro_2068, retro_ptro_3206, retro_ptro_595,
Pteropus vampyrus ENSPVAG00000002865 ortholog_one2one 1 retrogene
retro_pvam_193,
Rattus norvegicus ENSRNOG00000021264 ortholog_one2one 1 retrogene
retro_rnor_1035,
Sorex araneus ENSSARG00000004070 ortholog_one2one 1 retrogene
retro_sara_640,
Sus scrofa ENSSSCG00000030642 ortholog_one2one 1 retrogene
retro_sscr_113,
Tursiops truncatus ENSTTRG00000015368 ortholog_one2one 2 retrogenes
retro_ttru_1868, retro_ttru_440,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mmul_1059 78.95 93.87
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2. retro_mmul_1960 65.98 90.04
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3. retro_mmul_2570 79.69 99.62
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Download FASTA sequences of all ENSMMUG00000013259 retrocopies