Parental gene:

MMU.3952, ENSMMUG00000003050

Aliases:None
Description:40S ribosomal protein S15 [Source:RefSeq peptide;Acc:NP_001252851]
Organism:Rhesus macaque (Macaca mulatta)
Coordinates:19:1207479..1209611(+)


>ENSMMUG00000003050
ATGTTGGGGCGCGGGGCGGACCCGGCAGAGGTAGAGCAGAAGAAGAAGCGGACCTTCCGCAAGTTCACCTACCGCGGCGT
GGACCTGGACCAGCTGCTGGACATGTCCTACGAGCAGCTGATGCAACTGTACAGTGCGCGCCAGCGGCGGCGGCTGAACC
GGGGCCTGCGGCGGAAGCAGCACTCACTGCTGAAGCGCCTGCGCAAGGCCAAGAAGGAGGCGCCGCCCATGGAGAAGCCA
GAAGTGGTGAAGACGCACTTGCGGGACATGATCATCCTGCCAGAGATGGTGGGCAGCATGGTGGGCGTCTACAACGGCAA
GACCTTCAACCAGGTGGAGATCAAGCCCGAGATGATTGGCCACTACCTGGGCGAGTTCTCCATCACCTACAAGCCCGTGA
AGCACGGCCGGCCCGGCATTGGAGCCACCCACTCCTCCCGCTTCATCCCTCTCAAGTAG

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 156 .20 RPM
SRP007412_brain 46 .84 RPM
SRP007412_cerebellum 47 .01 RPM
SRP007412_heart 105 .05 RPM
SRP007412_kidney 81 .69 RPM
SRP007412_liver 220 .92 RPM
SRP007412_testis 90 .77 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000005632 possible_ortholog 13 retrogenes
retro_cjac_143, retro_cjac_151, retro_cjac_1517, retro_cjac_1607, retro_cjac_1672, retro_cjac_1714, retro_cjac_2069, retro_cjac_2236, retro_cjac_2596, retro_cjac_2656, retro_cjac_48, retro_cjac_756, retro_cjac_86,
Echinops telfairi ENSETEG00000008645 possible_ortholog 1 retrogene
retro_etel_2,
Gorilla gorilla ENSGGOG00000002818 possible_ortholog 4 retrogenes
retro_ggor_1136, retro_ggor_116, retro_ggor_141, retro_ggor_1851,
Mus musculus ENSMUSG00000063457 possible_ortholog 8 retrogenes
retro_mmus_1270, retro_mmus_208, retro_mmus_2734, retro_mmus_2786, retro_mmus_3166, retro_mmus_3642, retro_mmus_520, retro_mmus_917,
Nomascus leucogenys ENSNLEG00000001651 possible_ortholog 8 retrogenes
retro_nleu_105, retro_nleu_1858, retro_nleu_1922, retro_nleu_2390, retro_nleu_2465, retro_nleu_2559, retro_nleu_461, retro_nleu_544,
Otolemur garnettii ENSOGAG00000015776 possible_ortholog 4 retrogenes
retro_ogar_194, retro_ogar_210, retro_ogar_2237, retro_ogar_96,
Pongo abelii ENSPPYG00000009317 possible_ortholog 4 retrogenes
retro_pabe_1233, retro_pabe_2321, retro_pabe_67, retro_pabe_893,
Pan troglodytes ENSPTRG00000010200 possible_ortholog 1 retrogene
retro_ptro_122,
Rattus norvegicus ENSRNOG00000024603 possible_ortholog 8 retrogenes
retro_rnor_1384, retro_rnor_1711, retro_rnor_1712, retro_rnor_178, retro_rnor_2086, retro_rnor_2114, retro_rnor_2642, retro_rnor_700,
Ictidomys tridecemlineatus ENSSTOG00000006423 possible_ortholog 2 retrogenes
retro_itri_722, retro_itri_939,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mmul_838 80.00 100.00
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2. retro_mmul_2130 84.38 88.28
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Download FASTA sequences of all ENSMMUG00000003050 retrocopies