Parental gene:

MMU.9847, ENSMMUG00000001816

Aliases:None
Description:microtubule-associated protein RP/EB family member 1 [Source:RefSeq peptide;Acc:NP_001253729]
Organism:Rhesus macaque (Macaca mulatta)
Coordinates:10:31703658..31735570(-)


>ENSMMUG00000001816
ATGGCAGTGAACGTATACTCAACGTCAGTGACCAGTGATAACCTAAGTCGACATGACATGCTGGCTTGGATCAATGAGTC
TCTGCAGTTGAATCTGACAAAGATCGAGCAGTTGTGCTCAGGGGCTGCCTATTGTCAGTTTATGGACATGCTGTTCCCTG
GCTCCATTGCCTTGAAGAAAGTGAAATTCCAGGCTAAGCTAGAACACGAGTACATCCAGAACTTCAAAATACTACAAGCG
GGTTTTAAGAGAATGGGTGTTGACAAAATAATTCCTGTGGACAAATTAGTAAAAGGAAAGTTTCAGGACAATTTTGAATT
CGTTCAGTGGTTCAAGAAGTTTTTTGATGCAAACTATGATGGAAAAGACTATGACCCTGTGGCTGCCAGACAAGGTCAAG
AAACTGCGGTGGCTCCTTCCCTTGTTGCTCCAGCTCTGAATAAACCGAAGAAACCTCTCAGTTCTAGCAGTGCAGCTCCC
CAGAGGCCCATGTCAACACAGAGAACTGCTGCGGCTCCTAAGGCGGGCCCTGGTGTGGTGCGAAAGAACCCTGGTGTGGG
CAACGGGGATGACGAGGCAGCTGAGTTGATGCAGCAGGTCAACGTATTGAAACTTACTGTTGAAGACTTGGAGAAAGAGA
GGGATTTCTACTTCGGAAAGCTACGGAACATTGAATTGATTTGCCAGGAGAATGAGGGGGAAAACGACCCTGTATTGCAG
AGGATTGTAGACATTCTGTATGCCACAGATGTATGCTTTGTGATACCTGATGAAGGGGGCCCACAGGAGGAGCAAGAAGA
GTATTAA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 11 .34 RPM
SRP007412_brain 10 .53 RPM
SRP007412_cerebellum 5 .75 RPM
SRP007412_heart 16 .96 RPM
SRP007412_kidney 13 .50 RPM
SRP007412_liver 2 .97 RPM
SRP007412_testis 20 .54 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000013238 ortholog_one2one 3 retrogenes
retro_amel_1187, retro_amel_1436, retro_amel_848,
Canis familiaris ENSCAFG00000007306 ortholog_one2many 13 retrogenes
retro_cfam_1338, retro_cfam_1554, retro_cfam_1665, retro_cfam_1804, retro_cfam_1808, retro_cfam_2084, retro_cfam_2163, retro_cfam_241, retro_cfam_547, retro_cfam_762, retro_cfam_774, retro_cfam_806, retro_cfam_913,
Choloepus hoffmanni ENSCHOG00000006737 ortholog_one2one 10 retrogenes
retro_chof_1064, retro_chof_1075, retro_chof_1113, retro_chof_1138, retro_chof_1514, retro_chof_2248, retro_chof_2557, retro_chof_2591, retro_chof_643, retro_chof_704,
Callithrix jacchus ENSCJAG00000015601 ortholog_one2many 10 retrogenes
retro_cjac_1424, retro_cjac_1647, retro_cjac_1946, retro_cjac_2077, retro_cjac_2084, retro_cjac_2366, retro_cjac_2861, retro_cjac_3259, retro_cjac_3271, retro_cjac_3308,
Cavia porcellus ENSCPOG00000023542 possible_ortholog 1 retrogene
retro_cpor_194,
Dasypus novemcinctus ENSDNOG00000007431 ortholog_one2one 2 retrogenes
retro_dnov_730, retro_dnov_822,
Felis catus ENSFCAG00000007783 ortholog_one2one 2 retrogenes
retro_fcat_1335, retro_fcat_970,
Gorilla gorilla ENSGGOG00000022496 ortholog_one2one 1 retrogene
retro_ggor_2765,
Loxodonta africana ENSLAFG00000015453 ortholog_one2one 1 retrogene
retro_lafr_975,
Microcebus murinus ENSMICG00000001965 ortholog_one2one 3 retrogenes
retro_mmur_1125, retro_mmur_1179, retro_mmur_129,
Myotis lucifugus ENSMLUG00000016403 ortholog_one2one 6 retrogenes
retro_mluc_1212, retro_mluc_1811, retro_mluc_1812, retro_mluc_1883, retro_mluc_635, retro_mluc_931,
Monodelphis domestica ENSMODG00000019445 ortholog_one2one 3 retrogenes
retro_mdom_1213, retro_mdom_1946, retro_mdom_431,
Mustela putorius furo ENSMPUG00000017867 ortholog_one2one 3 retrogenes
retro_mputfur_1240, retro_mputfur_1304, retro_mputfur_341,
Oryctolagus cuniculus ENSOCUG00000024265 ortholog_one2one 1 retrogene
retro_ocun_582,
Otolemur garnettii ENSOGAG00000026557 ortholog_one2many 2 retrogenes
retro_ogar_226, retro_ogar_2290,
Ochotona princeps ENSOPRG00000006707 ortholog_one2one 4 retrogenes
retro_opri_1161, retro_opri_1162, retro_opri_1212, retro_opri_807,
Pteropus vampyrus ENSPVAG00000015887 ortholog_one2one 1 retrogene
retro_pvam_1035,
Tarsius syrichta ENSTSYG00000000833 ortholog_one2one 1 retrogene
retro_tsyr_2018,
Tursiops truncatus ENSTTRG00000014809 ortholog_one2one 2 retrogenes
retro_ttru_1683, retro_ttru_1917,
Drosophila melanogaster FBgn0027066 ortholog_many2many 1 retrogene
retro_dmel_83,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mmul_1938 78.88 59.33
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2. retro_mmul_2374 85.50 73.51
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Download FASTA sequences of all ENSMMUG00000001816 retrocopies