Parental gene:

ENSCPOG00000023542

Aliases:None
Description:None
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_8:427573..446322(-)


>ENSCPOG00000023542
ATGGCAGTGAACGTATATTCAACGTCAGTCACCAGTGATAATCTAAGTCGACATGACATGCTGGCCTGGATCAATGAGTC
TCTGCAGTTGAATCTGACAAAGATCGAACAGTTGTGCTCAGGTGCTGCCTATTGTCAGTTTATGGACATGCTCTTCCCTG
GCTCCATTGCCTTGAAGAAAGTGAAATTCCAAGCTAAGCTGGAGCATGAATATATCCAGAACTTCAAAATACTACAAGCA
GGTTTTAAACGAATGGGTGTTGATAAAATAATTCCTGTGGATAAATTAGTAAAAGGAAAATTTCAGGACAATTTTGAATT
TGTTCAGTGGTTCAAGAAGTTTTTTGATGCAAACTACGATGGGAAAGAGTATGACCCTGTAGCTGCCAGACAAGGTCAGG
AGACTGCAGTGGCTCCTTCCCTTGTTGCTCCTGCTCTGAATAAACCGAAGAAACCTCTCAGCTCTAGCAGTGCAGCTCCA
CAGAGACCCATTTCAACACAGAGAACTACTTCGACTCCTAAGGCTGGCCCAGGGGTGGTACGGAAGAATCCTGGTGTGGG
TAACGGGGATGATGAGGCAGCTGAACTGATGCAGCAGGTAAATGTGTTGAAACTTACTGTTGAAGACTTGGAGAAAGAAA
GAGATTTCTACTTTGGAAAGCTAAGGAACATTGAATTGATTTGCCAGGAGAATGAGGGAGAAAATGACCCTGTCTTGCAG
AGGATTGTAGACATTCTGTATGCCACAGATGAAGGCTTCGTGATACCTGATGAAGGAGGCCCACAGGAGGAACAAGAAGA
ATATTAA

Library Parental gene expression (RPM)
SRP017611_liver 13 .54 RPM
SRP017611_kidney 26 .70 RPM
SRP017611_brain 35 .14 RPM
SRP040447_lung 64 .44 RPM
SRP040447_skeletal_muscle 24 .94 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000013238 possible_ortholog 3 retrogenes
retro_amel_1187, retro_amel_1436, retro_amel_848,
Canis familiaris ENSCAFG00000007306 possible_ortholog 13 retrogenes
retro_cfam_1338, retro_cfam_1554, retro_cfam_1665, retro_cfam_1804, retro_cfam_1808, retro_cfam_2084, retro_cfam_2163, retro_cfam_241, retro_cfam_547, retro_cfam_762, retro_cfam_774, retro_cfam_806, retro_cfam_913,
Choloepus hoffmanni ENSCHOG00000006737 possible_ortholog 10 retrogenes
retro_chof_1064, retro_chof_1075, retro_chof_1113, retro_chof_1138, retro_chof_1514, retro_chof_2248, retro_chof_2557, retro_chof_2591, retro_chof_643, retro_chof_704,
Callithrix jacchus ENSCJAG00000015601 possible_ortholog 10 retrogenes
retro_cjac_1424, retro_cjac_1647, retro_cjac_1946, retro_cjac_2077, retro_cjac_2084, retro_cjac_2366, retro_cjac_2861, retro_cjac_3259, retro_cjac_3271, retro_cjac_3308,
Dasypus novemcinctus ENSDNOG00000007431 possible_ortholog 2 retrogenes
retro_dnov_730, retro_dnov_822,
Erinaceus europaeus ENSEEUG00000004499 ortholog_one2many 1 retrogene
retro_eeur_179,
Echinops telfairi ENSETEG00000017922 ortholog_one2many 4 retrogenes
retro_etel_1747, retro_etel_1778, retro_etel_2148, retro_etel_222,
Felis catus ENSFCAG00000007783 possible_ortholog 2 retrogenes
retro_fcat_1335, retro_fcat_970,
Gorilla gorilla ENSGGOG00000022496 possible_ortholog 1 retrogene
retro_ggor_2765,
Loxodonta africana ENSLAFG00000015453 possible_ortholog 1 retrogene
retro_lafr_975,
Microcebus murinus ENSMICG00000001965 possible_ortholog 3 retrogenes
retro_mmur_1125, retro_mmur_1179, retro_mmur_129,
Myotis lucifugus ENSMLUG00000016403 possible_ortholog 6 retrogenes
retro_mluc_1212, retro_mluc_1811, retro_mluc_1812, retro_mluc_1883, retro_mluc_635, retro_mluc_931,
Macaca mulatta ENSMMUG00000001816 possible_ortholog 2 retrogenes
retro_mmul_1938, retro_mmul_2374,
Monodelphis domestica ENSMODG00000019445 ortholog_one2many 3 retrogenes
retro_mdom_1213, retro_mdom_1946, retro_mdom_431,
Mustela putorius furo ENSMPUG00000017867 possible_ortholog 3 retrogenes
retro_mputfur_1240, retro_mputfur_1304, retro_mputfur_341,
Mus musculus ENSMUSG00000027479 ortholog_one2many 2 retrogenes
retro_mmus_3160, retro_mmus_3466,
Oryctolagus cuniculus ENSOCUG00000024265 possible_ortholog 1 retrogene
retro_ocun_582,
Otolemur garnettii ENSOGAG00000026557 possible_ortholog 2 retrogenes
retro_ogar_226, retro_ogar_2290,
Ochotona princeps ENSOPRG00000006707 possible_ortholog 4 retrogenes
retro_opri_1161, retro_opri_1162, retro_opri_1212, retro_opri_807,
Pteropus vampyrus ENSPVAG00000015887 possible_ortholog 1 retrogene
retro_pvam_1035,
Sorex araneus ENSSARG00000002368 ortholog_one2many 1 retrogene
retro_sara_380,
Tarsius syrichta ENSTSYG00000000833 possible_ortholog 1 retrogene
retro_tsyr_2018,
Tursiops truncatus ENSTTRG00000014809 possible_ortholog 2 retrogenes
retro_ttru_1683, retro_ttru_1917,
Drosophila melanogaster FBgn0027066 ortholog_many2many 1 retrogene
retro_dmel_83,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cpor_194 69.93 52.61
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Download FASTA sequences of all ENSCPOG00000023542 retrocopies